Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I10
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              211   3e-55
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 29   3.7  
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.5  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  211 bits (516), Expect = 3e-55
 Identities = 97/139 (69%), Positives = 118/139 (84%), Gaps = 2/139 (1%)
 Frame = +2

Query: 11  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 190
           M RY+ +P+NP KSCKARGSNLRVH+KNT+E AMAI+ + +R+A RYLK+V  KK+ +PF
Sbjct: 1   MTRYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPF 60

Query: 191 RRFNGGVGRCAQAKQFGT--TQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQ 364
           R++NGGVGR AQAK      +QGRWPKKSAE LLQLL+NAESNA++KGLDVD LV++HIQ
Sbjct: 61  RKYNGGVGRKAQAKNLKVPGSQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQ 120

Query: 365 VNRAPCLRRRTYRAHGRIN 421
           VN AP +RRRTYRAHGRIN
Sbjct: 121 VNEAPSMRRRTYRAHGRIN 139


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/90 (25%), Positives = 35/90 (38%)
 Frame = +2

Query: 137 RAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNA 316
           R  R      EKK C  F   +  +     AKQ    +G WP     FL+  + N     
Sbjct: 174 RTKRLYSKSEEKKYCGLFG--DPHLRTFEDAKQTCVVEGAWPLVENHFLIVQVTNVPL-V 230

Query: 317 DYKGLDVDRLVIDHIQVNRAPCLRRRTYRA 406
           D         +   IQ N+  C++++ Y+A
Sbjct: 231 DGSSATATNKITVIIQENKDSCVQQKIYKA 260


>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2225

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 76   SCSLQEHL*NCHGYKKTASSPCCPLPKECDRKEG 177
            SC+ Q+    C   +K A+SPC P  K  D  EG
Sbjct: 1713 SCTCQDKNRGCGAIQKCATSPCAPGYKCKDFPEG 1746


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,103,825
Number of Sequences: 59808
Number of extensions: 331910
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)