Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I10
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   241   3e-64
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   152   2e-37
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   3.2  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  241 bits (589), Expect = 3e-64
 Identities = 110/148 (74%), Positives = 126/148 (85%)
 Frame = +2

Query: 20  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 199
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 200 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAP 379
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+YKGLDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 380 CLRRRTYRAHGRINPYMSSPCHIEVCLS 463
            LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILA 153


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  152 bits (369), Expect = 2e-37
 Identities = 85/148 (57%), Positives = 96/148 (64%)
 Frame = +2

Query: 20  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 199
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 200 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAP 379
                                    + L     NAE    YKGLDVD LVI+HI V RA 
Sbjct: 66  ------------------------LDLLKNAESNAE----YKGLDVDHLVIEHINVQRAA 97

Query: 380 CLRRRTYRAHGRINPYMSSPCHIEVCLS 463
            LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILA 125


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 287 GAGILQISWANDPVWYQTV*LVH 219
           GAG+ +I W N+  W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 146 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 325
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 326 GLD 334
           G +
Sbjct: 554 GYE 556


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 146 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 325
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 326 GLD 334
           G +
Sbjct: 554 GYE 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,101
Number of Sequences: 27780
Number of extensions: 238321
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)