Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I09
(422 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 96 2e-19
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 59 4e-08
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 46 2e-04
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 44 0.002
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 40 0.028
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 36 0.26
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 36 0.45
UniRef50_Q4P4W0 Cluster: Putative uncharacterized protein; n=1; ... 35 0.79
UniRef50_A3BRA8 Cluster: Putative uncharacterized protein; n=1; ... 33 2.4
UniRef50_A1UJ10 Cluster: Ribonuclease, Rne/Rng family; n=17; Myc... 33 3.2
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 32 4.2
UniRef50_Q766U9 Cluster: Crustocalcin-b; n=3; Marsupenaeus japon... 32 4.2
UniRef50_Q2HGJ5 Cluster: Putative uncharacterized protein; n=3; ... 32 4.2
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 31 7.4
UniRef50_UPI0000E493B2 Cluster: PREDICTED: similar to WD repeat ... 31 9.7
UniRef50_A1GDP0 Cluster: Ribonuclease, Rne/Rng family; n=2; Sali... 31 9.7
UniRef50_Q1JTI3 Cluster: Ubiquitin-protein ligase 1, putative; n... 31 9.7
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 96.3 bits (229), Expect = 2e-19
Identities = 46/56 (82%), Positives = 51/56 (91%)
Frame = +3
Query: 3 RKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIKLPETHPAV 170
RKLNPLTNTKAMLKLNPYAAVL++KAVL+QV+R N RAL VAEKRGIKLP+ PAV
Sbjct: 179 RKLNPLTNTKAMLKLNPYAAVLKKKAVLDQVKRKNKRALEVAEKRGIKLPDDDPAV 234
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 58.8 bits (136), Expect = 4e-08
Identities = 25/53 (47%), Positives = 39/53 (73%)
Frame = +3
Query: 3 RKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIKLPETH 161
R+LNPLTN + ++KLNPYA VL+R+A L +R + LA A+K+ ++L ++H
Sbjct: 317 RRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSH 369
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 46.4 bits (105), Expect = 2e-04
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 43.6 bits (98), Expect = 0.002
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N MLKLNPYA +RR +L Q + + LR
Sbjct: 154 KKNPLKNLGIMLKLNPYAKTMRRNTILRQAKNHKLR 189
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 39.5 bits (88), Expect = 0.028
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPLTN + MLKLNP A + R +L + R + L+
Sbjct: 35 KKNPLTNLRIMLKLNPDAKTMHRNTILPEARNHKLQ 70
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 36.3 bits (80), Expect = 0.26
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 3 RKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIK 146
+K NPL NTKAM +LNPYA +R A + ++ N + + + +K
Sbjct: 317 QKKNPLKNTKAMDRLNPYAK-KQRAAAVAAIKANTKGTKKIKKNKALK 363
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 35.5 bits (78), Expect = 0.45
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRA 116
K NPL N AM KLNPYA V R Q R+ +A
Sbjct: 320 KRNPLKNKSAMDKLNPYAKVAREMQARAQEERSKAKA 356
>UniRef50_Q4P4W0 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1523
Score = 34.7 bits (76), Expect = 0.79
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 14 PADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRETWH 142
P D GD++ P RGA + G+R+G E QP G + + H
Sbjct: 1050 PLDAEMGDLD--PTMRGARSTNGNRSGDESQPAGGKDKASERH 1090
>UniRef50_A3BRA8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 362
Score = 33.1 bits (72), Expect = 2.4
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 14 PADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRR 130
PA + D EA P +GG R E+P GARRRR
Sbjct: 208 PAGRAVRDPEAVPAGAYGAEDGGRRRRDAERPRGARRRR 246
>UniRef50_A1UJ10 Cluster: Ribonuclease, Rne/Rng family; n=17;
Mycobacterium|Rep: Ribonuclease, Rne/Rng family -
Mycobacterium sp. (strain KMS)
Length = 991
Score = 32.7 bits (71), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 11 EPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRR 130
EPAD+ + + E + V A++E Q E+P RRRR
Sbjct: 161 EPADEDDDEDEDDDVAASADSEDDDEDDQSERPAARRRRR 200
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 32.3 bits (70), Expect = 4.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 3 RKLNPLTNTKAMLKLNPYAAVLRRK 77
++ NPL N AM+KLNPYA + K
Sbjct: 315 KRANPLKNWAAMVKLNPYAKIASHK 339
>UniRef50_Q766U9 Cluster: Crustocalcin-b; n=3; Marsupenaeus
japonicus|Rep: Crustocalcin-b - Penaeus japonicus
(Kuruma prawn)
Length = 834
Score = 32.3 bits (70), Expect = 4.2
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 11 EP-ADQYEGDVEA-EPVRRGAETEGGSRTGQEEQPEG 115
EP A++ EG+ EA EP +GAE EG S EE EG
Sbjct: 175 EPEAEEAEGEEEAAEPEAKGAEAEGKSDAEAEEDAEG 211
>UniRef50_Q2HGJ5 Cluster: Putative uncharacterized protein; n=3;
Sordariomycetes|Rep: Putative uncharacterized protein -
Chaetomium globosum (Soil fungus)
Length = 239
Score = 32.3 bits (70), Expect = 4.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 23 QYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 133
Q EGD EAE + GA G R + E+ E RR RE
Sbjct: 194 QQEGDAEAEGMLDGAAIVEGMRLREREEEEENRRERE 230
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 31.5 bits (68), Expect = 7.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 3 RKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIK 146
+K NPL N+KA+ +LNPYA +R A V+ + + + + +K
Sbjct: 163 QKKNPLKNSKALDRLNPYAK-KQRAAATAAVKAHTTGTKKIKKNKALK 209
>UniRef50_UPI0000E493B2 Cluster: PREDICTED: similar to WD repeat
domain 66; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to WD repeat domain 66 -
Strongylocentrotus purpuratus
Length = 1181
Score = 31.1 bits (67), Expect = 9.7
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 2 TEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQ-PEGA 118
TE+ EG E EPV G + EGG GQE+ PE A
Sbjct: 88 TEVTEEQAEEGQKEEEPVEEGRQEEGGG--GQEDNVPEEA 125
>UniRef50_A1GDP0 Cluster: Ribonuclease, Rne/Rng family; n=2;
Salinispora|Rep: Ribonuclease, Rne/Rng family -
Salinispora arenicola CNS205
Length = 1058
Score = 31.1 bits (67), Expect = 9.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 2 TEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 133
TE+E + E D EA VR+ ET +T + E+P E
Sbjct: 314 TEVETGEPREADEEAREVRKPRETAEPRKTEEAEEPRETEEAEE 357
>UniRef50_Q1JTI3 Cluster: Ubiquitin-protein ligase 1, putative; n=3;
Eukaryota|Rep: Ubiquitin-protein ligase 1, putative -
Toxoplasma gondii RH
Length = 8112
Score = 31.1 bits (67), Expect = 9.7
Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +2
Query: 59 RGAETEG---GSRTGQEEQPEGARRRRE 133
RGAE G G+R G EE+ E ARRRRE
Sbjct: 4761 RGAEGRGKSRGTRGGAEEEDEEARRRRE 4788
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,115,848
Number of Sequences: 1657284
Number of extensions: 3066883
Number of successful extensions: 13530
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13507
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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