Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I09
         (422 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                42   2e-04
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.91 
SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)                   29   1.2  
SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   8.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 21/45 (46%), Positives = 27/45 (60%)
 Frame = +3

Query: 6   KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRG 140
           K NPL N   ML+LNPYA   +R  +L   RR   +  A+A+KRG
Sbjct: 254 KKNPLKNLGTMLRLNPYAKSAKRAEMLTVERRRAAKEAALAKKRG 298


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 5   EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 133
           E  P D  +G    E    GAE  G S T QE QPE A  + +
Sbjct: 577 ESHPPDHTQGADSGEKTSSGAEKTGTS-TSQESQPEKAENQTQ 618


>SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)
          Length = 926

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 35  DVEAEPVRRGAETEGGSRTGQEEQPEGARRRR 130
           D E EP +  +E   GS +  EE+ E A RRR
Sbjct: 716 DEEGEPCQNVSEEVEGSESSDEEEEEDASRRR 747


>SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 943

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 143 DATFLCDGERPQV-VPPDLFENRL 75
           DATF  DGE+  V +P D+F  +L
Sbjct: 380 DATFFFDGEKDHVDIPDDVFPQKL 403


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 20  DQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRETWH 142
           D+  G V  +  R+G+++EGGS   + E  +   R+++  H
Sbjct: 85  DKKAGKVRDDRARKGSDSEGGSDERKCEDRKDKTRKKKRKH 125


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 107  VVPPDLFENRLPSQHRGVRVQLQHRLRIGQR 15
            + P       LPS HRG R+ ++   R G R
Sbjct: 1572 MTPDSRLHRLLPSSHRGTRLLMERAHRAGHR 1602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,699,151
Number of Sequences: 59808
Number of extensions: 85995
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)