Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I09
         (422 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    26   0.49 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   1.5  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    24   2.0  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   4.6  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 47   EPVRRGAETEGGSRTGQEEQPEGARRRRE 133
            E  RRG+   GG    +EE+ EG+R+R++
Sbjct: 959  EKARRGS---GGDSDSEEEEGEGSRKRKK 984



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 19/104 (18%), Positives = 35/104 (33%)
 Frame = +2

Query: 17   ADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRETWHXXXXXXXXXXXXXXXXXX 196
            +++ EG+   +  ++GA   GG +  Q+   EG  ++++                     
Sbjct: 971  SEEEEGEGSRKRKKKGAS--GGQKKRQKAMDEGLSQKQKGRILSKATVSTSESDSDDSRL 1028

Query: 197  XXXXXXXXXXXXXXXXAQKDPPSAPQEEDAQGSQT*GESGQTSG 328
                             ++    A  EED+ GSQ    S   SG
Sbjct: 1029 KIASGDESGGESGAPATKRKRRIASDEEDSDGSQRRSRSRSRSG 1072


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 95  DLFENRLPS-QHRGVRVQLQHRLRIGQRVQF 6
           DL E  L + +HR  + +L+  +++G+R +F
Sbjct: 336 DLQERSLAAAEHRTAKTRLEKAIKVGKRAEF 366


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 122 GERPQVVPPDLFENRLPSQHRGVRVQLQHRLRIGQRVQ 9
           GER   VPP L + R   QH+  + Q Q + +  QR Q
Sbjct: 294 GER--YVPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQ 329


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 41  EAEPVRRGAETEGGSRTGQEEQPEGARRRRE 133
           EA+ ++   +TEGG   G+ EQ      ++E
Sbjct: 280 EAKELQERIDTEGGGVLGELEQQLAVESKKE 310


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,373
Number of Sequences: 2352
Number of extensions: 2570
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 35060166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)