Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I09
(422 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L20868-1|AAA60281.2| 426|Homo sapiens ribosomal protein L4 prot... 46 4e-05
D23660-1|BAA04887.1| 427|Homo sapiens ribosomal protein protein. 46 4e-05
BC095427-1|AAH95427.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
BC066925-1|AAH66925.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
BC014653-1|AAH14653.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
BC010151-1|AAH10151.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
BC009888-1|AAH09888.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
BC007996-1|AAH07996.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
BC007748-1|AAH07748.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
BC005817-1|AAH05817.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
BC001365-1|AAH01365.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
AK223057-1|BAD96777.1| 427|Homo sapiens ribosomal protein L4 va... 46 4e-05
AB061820-1|BAB79458.1| 427|Homo sapiens ribosomal protein L4 pr... 46 4e-05
AB208977-1|BAD92214.1| 441|Homo sapiens ribosomal protein L4 va... 45 1e-04
U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel... 30 3.7
U18945-1|AAA91633.1| 299|Homo sapiens cyclic nucleotide gated c... 30 3.7
AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor CNG-c... 30 3.7
AF286472-1|AAG00551.1| 567|Homo sapiens retinitis pigmentosa GT... 29 4.9
BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein. 29 6.5
AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein pr... 29 6.5
AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein. 29 6.5
>L20868-1|AAA60281.2| 426|Homo sapiens ribosomal protein L4
protein.
Length = 426
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 314 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 349
>D23660-1|BAA04887.1| 427|Homo sapiens ribosomal protein protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC095427-1|AAH95427.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC066925-1|AAH66925.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC014653-1|AAH14653.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC010151-1|AAH10151.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC009888-1|AAH09888.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC007996-1|AAH07996.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC007748-1|AAH07748.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC005817-1|AAH05817.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>BC001365-1|AAH01365.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>AK223057-1|BAD96777.1| 427|Homo sapiens ribosomal protein L4
variant protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>AB061820-1|BAB79458.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>AB208977-1|BAD92214.1| 441|Homo sapiens ribosomal protein L4
variant protein.
Length = 441
Score = 44.8 bits (101), Expect = 1e-04
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 6 KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLR 113
K NPL N + MLKLNPYA +RR +L Q R + LR
Sbjct: 329 KKNPLKNLRIMLKLNPYAKTMRRNTILCQARNHKLR 364
>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel
beta subunit protein.
Length = 1251
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 5 EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPE 112
E+EP + E +VE EP AETE S +E E
Sbjct: 26 EVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKE 61
>U18945-1|AAA91633.1| 299|Homo sapiens cyclic nucleotide gated
channel gamma subunit protein.
Length = 299
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 5 EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPE 112
E+EP + E +VE EP AETE S +E E
Sbjct: 26 EVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKE 61
>AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor
CNG-channel beta subunit protein.
Length = 1245
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 5 EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPE 112
E+EP + E +VE EP AETE S +E E
Sbjct: 26 EVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKE 61
>AF286472-1|AAG00551.1| 567|Homo sapiens retinitis pigmentosa
GTPase regulator protein.
Length = 567
Score = 29.5 bits (63), Expect = 4.9
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 5 EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGA----RRRRE 133
E E + EG+VE E E E G G+E + EG RR RE
Sbjct: 429 EEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNRE 475
>BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein.
Length = 954
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 107 VVPPDLFENRLPSQHRGVRVQLQHRLRIGQRVQ 9
++ P L R P H VR+ L RLRIG+R Q
Sbjct: 115 LIYPQLHLVRTPEGHGEVRLHLGFRLRIGKRSQ 147
>AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 107 VVPPDLFENRLPSQHRGVRVQLQHRLRIGQRVQ 9
++ P L R P H VR+ L RLRIG+R Q
Sbjct: 6 LIYPQLHLVRTPEGHGEVRLHLGFRLRIGKRSQ 38
>AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein.
Length = 939
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 107 VVPPDLFENRLPSQHRGVRVQLQHRLRIGQRVQ 9
++ P L R P H VR+ L RLRIG+R Q
Sbjct: 100 LIYPQLHLVRTPEGHGEVRLHLGFRLRIGKRSQ 132
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,158,305
Number of Sequences: 237096
Number of extensions: 473461
Number of successful extensions: 2756
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2752
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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