Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I09
         (422 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    41   3e-04
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    39   0.002
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ...    28   2.3  
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P...    28   3.0  
At5g61150.1 68418.m07671 leo1-like family protein weak similarit...    27   6.9  
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    27   6.9  
At2g43630.1 68415.m05423 expressed protein                             26   9.1  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 6   KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKR 137
           K NPL N   MLKLNPYA   +R ++L + +R   +   +A+KR
Sbjct: 321 KKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKR 364


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 6   KLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIKLPETHPAV 170
           K NPL N   M KLNPYA   +R ++L +  R   +   + +KR +   E   A+
Sbjct: 322 KKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAI 376


>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
           SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
           contains Pfam profiles PF00226: DnaJ domain, PF01556:
           DnaJ C terminal region, PF00684: DnaJ central domain (4
           repeats)
          Length = 517

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 41  EAEPVRRGAETEGGSRTGQEEQPEGARRRRE--TWH 142
           E   +RR + + G + T QEEQ  G+  R+E   WH
Sbjct: 416 EFSSLRRSSSSTGPTETRQEEQSFGSEPRKEPSLWH 451


>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family;similar
           to HMG I/Y like protein (GI:15706274) [Glycine
           max];similar to HMR1 protein (GI:4218141) [Antirrhinum
           majus]; similar to high mobility group protein
           (GI:1483173) [Canavalia gladiata]
          Length = 480

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 5   EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPE 112
           E++P +      EA+     AET+GG   GQE + E
Sbjct: 431 EVQPEETAAPQTEAQQTE-AAETQGGQEEGQEREGE 465


>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
           to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04004: Leo1-like protein;
           supporting cDNA gi|21929714|gb|AF490422.1|
          Length = 625

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 20  DQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 133
           D+YE D E +   RG          +EE+  G R  ++
Sbjct: 550 DEYEEDAEEDEEERGKSNRYSDEDEEEEEVAGGRAEKD 587


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 5   EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEE 103
           E++ AD  E +VEAE    G +   G   G+E+
Sbjct: 183 ELDDADDGENEVEAEDEGNGEDEGDGEDEGEED 215


>At2g43630.1 68415.m05423 expressed protein
          Length = 274

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 5   EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGA 118
           +I+  D Y+ D       RG  + GG   G EE+PEG+
Sbjct: 113 QIQKKDFYDTDSGGNMPPRGGGSGGGGGNG-EERPEGS 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,824,499
Number of Sequences: 28952
Number of extensions: 63262
Number of successful extensions: 245
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)