Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I08
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    27   1.3  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    27   1.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   4.1  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   5.4  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   7.2  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   7.2  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +3

Query: 279 SPKQINTDEVHRLTFFDQLRNERQDDRWSWGYVNS---NGSGQETIKSSTTARTTNAVIY 449
           SPK      +  L+  D ++ ++   +   GY+++   NGS Q       + +T N++  
Sbjct: 355 SPKSKRVKTLENLSIMDFVQPKQMFGKEPEGYLSNQSNNGSAQNKKSGDNSEKTKNSLKS 414

Query: 450 NSGDSSNT 473
           +S  S+NT
Sbjct: 415 SSKKSANT 422


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 351 DDRWSWGYVNSNGSGQETIKSSTTARTTNAVIYNSGDSSNTTEDVHPCSPFI-PPPARGF 527
           DD W +G +    S   +I  ++T+ TT A       S+  T  V P S  +  PP+   
Sbjct: 318 DDGWEFGTIKQGQSNVSSITGTSTSTTTAAT-----SSTTVTGTVIPKSSTVHEPPSSND 372

Query: 528 SAP 536
           S P
Sbjct: 373 SHP 375


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 387 GSGQETIKSSTTARTTNAVIYNSG---DSSNTTEDVHPCSPFIPPP 515
           G+ Q    S +T++  + V YN G   +S+NTT+ ++  + F PPP
Sbjct: 103 GTSQYPSASFSTSQHPSQV-YNDGSTLNSNNTTQQLNNNNGFQPPP 147


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +3

Query: 354 DRWSWGY-VNSNGSGQETIKSSTTARTTNAVIYNSGDSSNTTEDVHPCSPFIPPPARGFS 530
           D W W +  +SN  G     S  ++  T+ +   S    NT+    P S     P+R  +
Sbjct: 106 DGWPWHHNSSSNPQGYAWTPSLLSSNATSYLHSGSSPHGNTSNHPSPISSLESLPSRSST 165

Query: 531 APG 539
             G
Sbjct: 166 GSG 168


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 273 TVSPKQINTDEVHRLTFFDQLRNERQDDRWSWG 371
           TVS K+ N D V RL   D  R E    +W+ G
Sbjct: 96  TVSEKEENKDAVTRLDSQDVKRFEETYSQWNSG 128


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 395 TRSVTVHISPTPSIVLPFVSELIKKCQTMDFVCIDLFR*HRATRRKKPSKNQIK 234
           +R +   IS  P + +    ++IKKC  ++F+CI     H+  R K+ +   IK
Sbjct: 155 SRKLVAFISAVP-LSIRVRDKIIKKCAEVNFLCI-----HKKLRSKRLTPLLIK 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,690
Number of Sequences: 5004
Number of extensions: 34438
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)