Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I08
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   1.8  
06_01_1199 - 10313329-10314858                                         29   3.1  
01_01_0635 - 4795434-4795461,4795897-4797365                           29   3.1  
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735     28   4.1  
01_01_0631 - 4752606-4752706,4754039-4755578                           28   4.1  
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250...    28   5.5  
01_06_1770 + 39782912-39783203,39783834-39783895,39783926-39784483     27   9.6  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +3

Query: 312 RLTFFDQLRNERQDDRWSWGYVNSNGSG---QETIKSSTTARTTNAV-IYNSGDSSNTTE 479
           +L F + +   R+D +++    N+  +G    + +   TT +T + +  Y+  +S N   
Sbjct: 472 KLVFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMG 531

Query: 480 DVHPCSPFIPPPARG 524
           +  PC  F+P PA G
Sbjct: 532 E--PCRKFVPKPANG 544


>06_01_1199 - 10313329-10314858
          Length = 509

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +3

Query: 384 NGSGQETIKSSTTARTTNAVIYNSGDSSNTTEDVHPCSPFIPPPAR 521
           NGS    +K++TT  TTN   YN     N + +  P SP +P PAR
Sbjct: 287 NGSLHNALKATTTDTTTND--YN----DNNSGEHPPPSPALPWPAR 326


>01_01_0635 - 4795434-4795461,4795897-4797365
          Length = 498

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 363 SWGYVNSNGSGQETIKSSTTARTTNAVIYNSG 458
           +W  +N  G+ +++ +     RTT+AV Y SG
Sbjct: 73  TWAILNRYGARRDSFRGDDRDRTTSAVSYTSG 104


>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
          Length = 738

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = +3

Query: 261 STCCTVSPKQINTDE--VHRLTFFDQLRNERQDDRWSWGYVNSNGSG---QETIKSSTTA 425
           S  C   P +  + E    +L F + +   R+D +++    N+  +G    + +   TT 
Sbjct: 391 SKLCVQDPSKDYSREWGFEKLVFRNSITKVRRDRKYAIQARNAYSAGVHMSQNVYGRTTH 450

Query: 426 RTTNAV-IYNSGDSSNTTEDVHPCSPFIPPPARG 524
           +T + +  Y+  +S N   +  PC  F+P P  G
Sbjct: 451 KTESLIRYYHYHNSINVMGE--PCREFVPVPVNG 482


>01_01_0631 - 4752606-4752706,4754039-4755578
          Length = 546

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 363 SWGYVNSNGSGQETIKSSTTARTTNAVIYNSG 458
           +W  +N  G+ +++ +     RTT+AV Y SG
Sbjct: 74  TWAILNRYGARRDSFRRDDRDRTTSAVSYTSG 105


>03_01_0319 -
           2499470-2499598,2499681-2499746,2499830-2499937,
           2500125-2500259,2500763-2500840,2500994-2501044,
           2501805-2501879,2501975-2502037,2503048-2503137,
           2503215-2503406,2503498-2503591,2503776-2504279,
           2504415-2504614,2504712-2504756,2505023-2505082,
           2505476-2505520,2505858-2505941,2506121-2506318,
           2506960-2507667
          Length = 974

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +3

Query: 261 STCCTVSPKQINTDEVH-RLTFFDQLRNERQDDRWSWGYVNSNGSGQETIKSSTTARTTN 437
           ST  +    QI     H R   F + R + Q   W WG + S G G+ + +      T N
Sbjct: 159 STSSSSPLSQIKHQARHVRTGSFQRFRQQMQR-AWKWGPIGSGGGGERSPREQLLRTTVN 217


>01_06_1770 + 39782912-39783203,39783834-39783895,39783926-39784483
          Length = 303

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
 Frame = +3

Query: 267 CCTVSPKQINTD-EVHRLTFFDQLRN--------ERQDDRWSWGYVNSNGSGQETIK 410
           CC   PK I  +  V +L    +LR+        +  D R +WGYV+  G G   ++
Sbjct: 144 CCAALPKVIEAEGSVTKLRLTRKLRSPCCKCRHVKLGDRRHTWGYVSDGGGGAGVVQ 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,748,577
Number of Sequences: 37544
Number of extensions: 210129
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)