Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I08
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53857| Best HMM Match : DUF948 (HMM E-Value=5.2) 30 1.1
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44) 29 2.4
SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08) 29 2.4
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39) 28 5.6
SB_32299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 27 9.8
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 27 9.8
>SB_53857| Best HMM Match : DUF948 (HMM E-Value=5.2)
Length = 217
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 327 DQLRNERQDD--RWSWGYVNSNGSGQETIKSSTTARTTNAVI---YNSGDSSNTTEDV 485
DQ R+E D R G + S Q+T++S++T +N+ + Y++ + SNTT+DV
Sbjct: 14 DQSRSEELKDFLRMKLGSHVTLNSIQDTLESNSTLEVSNSTLEVSYSTLEVSNTTQDV 71
>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
Length = 945
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 272 ATRRKKPSKNQIKFHFNLIICLF-SYSCMSRHL*LIELIFKKS*VIILNYF*YLFIYNKT 96
A R + +++ IK +L+I +F SY+C I L F I NY+ Y+ N
Sbjct: 183 AARNNRKTESNIKLAKSLLIVIFVSYTCFIPAAVCILLNFWSESKAIDNYYTYVLYLNSM 242
Query: 95 LKLV 84
L V
Sbjct: 243 LNFV 246
>SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)
Length = 292
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 272 ATRRKKPSKNQIKFHFNLIICLF-SYSCMSRHL*LIELIFKKS*VIILNYF*YLFIYNKT 96
A R + +++ IK +L+I +F SY+C I L F I NY+ Y+ N
Sbjct: 183 AARNNRKTESNIKLAKSLLIVIFVSYTCFIPAAVCILLNFWSESKAIDNYYTYVLYLNSM 242
Query: 95 LKLV 84
L V
Sbjct: 243 LNFV 246
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 411 SSTTARTTNAVIYNSGDSSNTTEDVHPCSPFIPPPARGFSA 533
+ST T +A+ +++ TT V PC PPP + F A
Sbjct: 430 ASTFDETYHALKFSAIAKQVTTRVVKPCDTVQPPPEKSFRA 470
>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 378 NSNGSGQETIKSSTTARTTNAVIYNSGDSSNTTEDVHPCSPFIPP 512
N+N S ++ T+ N N+ D++NT+++ H P +PP
Sbjct: 270 NNNISDNNNSDNNNTSDNNNTSDNNNSDNNNTSDNKHQ-QPQVPP 313
>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
Length = 721
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 363 SWGYVNSNGSGQETIKSSTTARTTNAVIYNSGDSSNTTED 482
SWG + G ++ K S TA T ++G S T+ED
Sbjct: 193 SWGRSSKKGVPAKSSKKSPTAITKRKAARSAGSSPATSED 232
>SB_32299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 375 VNSNGSGQETIKSSTTARTTNAVIYNSGDSSNTTEDVHP 491
V S+GSG ++K S T +T+ A S N T+D P
Sbjct: 130 VTSHGSGGFSVKDSKTRKTSIASATFSQSLLNLTQDTGP 168
>SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 342 ERQDDRWSWGYVNSNGSGQETIKSSTTARTTNAVIYNSGDSSNTTE 479
E+ D + G ++S+ S + + SST N+ I N+G N TE
Sbjct: 211 EKPADNTNTGRMSSDVSWESVVGSSTHQEGANSSIENTGLIDNNTE 256
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 480 LRLCYCYLHCY 448
LR CYCY +CY
Sbjct: 467 LRYCYCYCYCY 477
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 331 NSETNGKTIDGVGDM*TVTDLVKKQLKARQQ 423
N E +GK ++G G T+LVK+ +K ++
Sbjct: 80 NDEADGKIMEGNGGQDGATELVKQMVKGMEE 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,438
Number of Sequences: 59808
Number of extensions: 267425
Number of successful extensions: 834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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