Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I08
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41014-2|AAK32945.1|  182|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm rece...    27   6.5  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U41014-2|AAK32945.1|  182|Caenorhabditis elegans Hypothetical
           protein C06G1.2 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 387 GSGQETIKSSTTARTTNAVIYNSGDSSNTTEDV 485
           GSG E  K+STT  TT  V+  +    +TT +V
Sbjct: 34  GSGVEIEKASTTEATTTTVVETTTTVDSTTTEV 66


>Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 515 RRRDER*AWMYIFGCVTAI 459
           R R +R  W ++FGCVT+I
Sbjct: 712 RERLDRIPWWFVFGCVTSI 730


>AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 515 RRRDER*AWMYIFGCVTAI 459
           R R +R  W ++FGCVT+I
Sbjct: 712 RERLDRIPWWFVFGCVTSI 730


>Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical
           protein K01D12.4 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 455 TVIYYSVSCPGCCRAFNCFLTRSVT 381
           T++Y  V C  C   FN FL R VT
Sbjct: 153 TIVYGVVGCTCCVLFFNLFLERLVT 177


>AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 153 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 439 ALVVRAVVELLIVS*PDPLLFTYPQLHL 356
           ALV + ++ ++++S P  +LF+ P LHL
Sbjct: 252 ALVAQTIIPMVLLSFPIGILFSAPLLHL 279


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 339 NERQDDRWSWGYVNSNGSGQETIKSSTTARTTNAVIY--NSGDSSNTTEDVHPCSP 500
           N   DD       + +G      K+STTA  +N ++   + GD+S++TE     +P
Sbjct: 171 NPDDDDDGLPNVGDDDGKSSSANKTSTTAPDSNGLLIPNDKGDNSSSTEKTSTTTP 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,770
Number of Sequences: 27780
Number of extensions: 206404
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)