Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I08
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger) fa...    30   1.1  
At5g44720.1 68418.m05480 molybdenum cofactor sulfurase family pr...    28   4.6  
At3g58240.1 68416.m06493 meprin and TRAF homology domain-contain...    28   4.6  

>At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHA1a
           [Arabidopsis thaliana] GI:3790554; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 176

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261 STCCTVSPKQI-NTDEVHRLTFFDQLRNERQDDRWSWGY 374
           S CC V   +  N DE+ RLT    + +    DRW  GY
Sbjct: 102 SDCCAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGY 140


>At5g44720.1 68418.m05480 molybdenum cofactor sulfurase family
           protein weak similarity to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262; contains
           Pfam profiles PF03476: MOSC N-terminal beta barrel
           domain, PF03473: MOSC domain
          Length = 308

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 360 WSWGYVNSNGSGQETIKSSTT 422
           W+W   N+ G G++TIK   T
Sbjct: 273 WNWNLTNTEGEGKKTIKVGDT 293


>At3g58240.1 68416.m06493 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 246 FTWFFSTCCTVSPKQINTDE 305
           FTW     C+VSPK I +D+
Sbjct: 9   FTWVIKNFCSVSPKPIYSDQ 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,691,382
Number of Sequences: 28952
Number of extensions: 176581
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)