Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I07
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56660.1 68414.m06516 expressed protein 34 0.091
At5g50310.1 68418.m06229 kelch repeat-containing protein similar... 31 0.48
At2g33110.1 68415.m04059 synaptobrevin family protein similar to... 31 0.64
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa... 31 0.85
At4g34400.1 68417.m04886 transcriptional factor B3 family protei... 30 1.1
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 29 2.6
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 29 2.6
At2g43210.2 68415.m05371 UBX domain-containing protein contains ... 29 3.4
At2g43210.1 68415.m05370 UBX domain-containing protein contains ... 29 3.4
At1g22190.1 68414.m02775 AP2 domain-containing transcription fac... 29 3.4
At4g21430.1 68417.m03097 transcription factor jumonji (jmjC) dom... 28 4.5
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 28 4.5
At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1) id... 28 4.5
At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1) id... 28 4.5
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 28 4.5
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta... 28 4.5
At5g66540.1 68418.m08389 expressed protein ; supported by full-L... 28 6.0
At4g27980.1 68417.m04014 expressed protein 28 6.0
At4g02720.1 68417.m00368 expressed protein temporary automated f... 28 6.0
At5g30495.2 68418.m03660 expressed protein 27 7.9
At5g30495.1 68418.m03659 expressed protein 27 7.9
At3g58220.1 68416.m06491 meprin and TRAF homology domain-contain... 27 7.9
At3g27080.1 68416.m03387 mitochondrial import receptor subunit T... 27 7.9
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 27 7.9
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 33.9 bits (74), Expect = 0.091
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 400 KELEERRLSSPRKKELENRGLSNLRKGERTIIKHAEEG-AVEDRGIKLAEGTGRKRTIKP 576
+ELEE +KKE + G +K + K EE + ED+ +K + G K ++
Sbjct: 167 EELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNEDKKVKGKKEKGEKGDLEK 226
Query: 577 AEDELKKE 600
++E KKE
Sbjct: 227 EDEEKKKE 234
>At5g50310.1 68418.m06229 kelch repeat-containing protein similar to
Kelch repeats protein 3 (SP:Q08979) [Saccharomyces
cerevisiae]; contains Pfam PF01344: Kelch motif (6
repeats)
Length = 666
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 37 GKKEGFQDCGRRSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAIAEE 216
GKK G+ ++KT K+ E R++ KL+ E + + +E +KK EE
Sbjct: 2 GKKTKKPGKGKEKTERKTAKADEKKARREGKKLSPEDDIDAILLNIQKEEAKKKEVHVEE 61
Query: 217 *RILQPPKKEDCN 255
+ P + +C+
Sbjct: 62 -NVAAPSPRSNCS 73
>At2g33110.1 68415.m04059 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 217
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 218 EEYCNHRRKKTATTEGDKLFMVCWPNDCTAAVSCEVYGSVEERKIAYLEKKTSMSRRK 391
+E N + K +E L M V CE+ GS E + A+ K+T M R+K
Sbjct: 126 DEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKK 183
>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
family protein very low similarity to RING-H2 finger
protein RHG1a [Arabidopsis thaliana] GI:3822225;
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 343
Score = 30.7 bits (66), Expect = 0.85
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 282 CVGQMIVLLQFLVKSTGASKKERSLTSKKK--QACREEKYYQGAGRKKTIKPAEEGAGEQ 455
C+ +I LL + GAS+ + S+ K + +EK G G+ + A E G +
Sbjct: 223 CLPCIIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGNE 282
Query: 456 RTIKPAE 476
R + P +
Sbjct: 283 RVLLPED 289
>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 389
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 51 FSRLRAKELEEKDYQVCRRSWKKED*QACGRRSWKKEDY*AC 176
F +L AK + KD +VC + W + C R KKED C
Sbjct: 330 FGKLSAKTAKWKDQRVCIKRWMR----ICKRNKLKKEDRILC 367
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 108 SWKKED*QACGRRSWKKEDY*ACGRSWKKED 200
SW K++ A G SW K+D G SW K+D
Sbjct: 1179 SWGKQN-DAGGGSSWGKQDSGGDGSSWGKQD 1208
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 108 SWKKED*QACGRRSWKKEDY*ACGRSWKKED 200
SW K+ A G SW K+D G SW K+D
Sbjct: 1228 SWGKQS-DAGGGSSWGKQDGGGGGSSWGKQD 1257
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 108 SWKKED*QACGRRSWKKEDY*ACGRSWKKED 200
SW K+D G SW KE+ G SW K+D
Sbjct: 1131 SWGKQDGDG-GGSSWGKENDAGGGSSWGKQD 1160
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 108 SWKKED*QACGRRSWKKEDY*ACGRSWKKED 200
SW K++ + G SW K++ G SW K+D
Sbjct: 1166 SWGKQNDGSGGGSSWGKQNDAGGGSSWGKQD 1196
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 22 GLPGSGKKEGFQDCGRRSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLAEEAGR 192
G GKK + SW+K + GAG + E G+ KT++L ++ R
Sbjct: 630 GKDAKGKKVQIHEASDDSWEKGVVSEVGGAGGTSKLMVTLEN-GKVKTVELGKQGVR 685
>At2g43210.2 68415.m05371 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 403 ELEERRLSSPRKKELENRGLSNL--RKGERTIIKHAEEGA-VEDRGIKLAEGTGRKRTIK 573
E E R ++P + +R S++ ++ + T+I + G V R I L + K T+K
Sbjct: 238 EKEPIRPTAPGTNDNTSRVRSSVDRKRKQGTVINEEDSGVGVSGRDINLTKSVDTKETMK 297
Query: 574 PAEDELKKED 603
P ++ ++ED
Sbjct: 298 PKDEGGEEED 307
>At2g43210.1 68415.m05370 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 403 ELEERRLSSPRKKELENRGLSNL--RKGERTIIKHAEEGA-VEDRGIKLAEGTGRKRTIK 573
E E R ++P + +R S++ ++ + T+I + G V R I L + K T+K
Sbjct: 238 EKEPIRPTAPGTNDNTSRVRSSVDRKRKQGTVINEEDSGVGVSGRDINLTKSVDTKETMK 297
Query: 574 PAEDELKKED 603
P ++ ++ED
Sbjct: 298 PKDEGGEEED 307
>At1g22190.1 68414.m02775 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4 GI:2281633 from [Arabidopsis thaliana]
Length = 261
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/66 (22%), Positives = 26/66 (39%)
Frame = +2
Query: 296 DCTAAVSCEVYGSVEERKIAYLEKKTSMSRRKILPRSWKKEDYQARGRRSWRTEDYQTCG 475
D C+ ++++ +K +S R + +EDY + G TE Y + G
Sbjct: 155 DAKLEAICQNLAETTQKQVRSTKKSSSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGG 214
Query: 476 KEKGLS 493
LS
Sbjct: 215 SSSPLS 220
>At4g21430.1 68417.m03097 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 728
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +3
Query: 372 QACREEKYYQGAGRKKTIKPAEEGAGEQRTIKPAERRKDYHQACGRRSCGRQRNQACGRN 551
Q CR K + GR ++ PA+ K +R DY + S + G
Sbjct: 487 QICRIRKLMKNIGRVRSKNPAKGRESRFDKGKKRDRLDDYSSSDSESSQHCLGAKCRGSE 546
Query: 552 WKKEDYQACGR*AEKRGLSSLW 617
++ E+ ++C E+ LS+ +
Sbjct: 547 FEGEERESCNYSCEEESLSNTY 568
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 465 KPAERR-KDYHQACGRRSCGRQRNQACGRNW 554
KPAE R K + C RR C R +NQ C W
Sbjct: 54 KPAELRWKWIEEYCWRRGCYRNQNQ-CNDKW 83
>At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 315 LVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEE 440
L K +SKKE S T+ K++ C++ K ++ + KP E+
Sbjct: 278 LGKMESSSKKENS-TASKEEVCKQAKSWKKIYEAELAKPGED 318
>At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 315 LVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEE 440
L K +SKKE S T+ K++ C++ K ++ + KP E+
Sbjct: 278 LGKMESSSKKENS-TASKEEVCKQAKSWKKIYEAELAKPGED 318
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +1
Query: 406 LEERRLSSPRKKELENRGLSNLRKGERTIIKHAEEGAVEDRGIKLAEGTGRKRTIKPAED 585
++E R + + E + + N+RK G V R +K EG GR++ IK
Sbjct: 154 IDEERKWNLVSRVKEKKKVGNVRKVSVEGSNSYGNGRVSQR-VKKPEGFGRRKEIKEDVK 212
Query: 586 ELKKEDYQACGR 621
++ D + CGR
Sbjct: 213 LNERYDCEHCGR 224
>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
domain-containing protein / S-locus protein, putative
similar to S-locus protein 5 GI:6069485 from [Brassica
rapa]; contains Pfam profile PF00226 DnaJ domain
Length = 496
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 269 CLLRWLQSSF-FGGCSILHSSAIAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADL 93
C+LR QSS FG ++L + FL +S S +V+ L +A +V +L
Sbjct: 50 CILRGFQSSVKFGSAALL--LIMWSCFLSLTSVSCLVYVLLGMGAAGAVVLYLGRTPGIF 107
Query: 92 IVFFFQLL 69
IV F +L
Sbjct: 108 IVGLFGIL 115
>At5g66540.1 68418.m08389 expressed protein ; supported by
full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
Length = 524
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 400 KELEERRLSSPRKKELENRGLSNLRKGERTIIKHAEEGAVEDRGI--KLAEGTGRKRTIK 573
+E EE +K+ +N G+ + + + + EEG E+ GI K +G +++
Sbjct: 149 EEEEEEEEEEEEEKDGDNEGIEDKFFKIKELEEFLEEGEAEEYGIDHKNKKGVAQRKKQN 208
Query: 574 PAEDELKKED 603
++DE +++D
Sbjct: 209 LSDDEDEEDD 218
>At4g27980.1 68417.m04014 expressed protein
Length = 565
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 115 RKKTNKLAEEGVGRKKTIKLAEEAGRKKTA-IAEE*RILQPPKKEDCNHRRRQ 270
R +T + EE R+K ++ EEA ++KTA + + L+ KE+ R +
Sbjct: 166 RAETERRNEESEAREKDLRALEEAVKEKTAELKRKEETLELKMKEEAEKLREE 218
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 27.9 bits (59), Expect = 6.0
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Frame = +3
Query: 321 KSTGASKKERSLTS--KKKQACREEKYYQGAGRKKTIKPAEEGAG----EQRTIKPAERR 482
KS+ KK RS S KK+ R+ KY AE A E+ T ++RR
Sbjct: 154 KSSSKRKKSRSSRSFRKKRSHRRKTKYSDSDESSDEDSKAEISASSSGEEEDTKSKSKRR 213
Query: 483 KDYHQACGRRSCGRQRNQACGRNWKKED 566
K + +RS G + + +ED
Sbjct: 214 KKSSDSSSKRSKGEKTKSGSDSDGTEED 241
>At5g30495.2 68418.m03660 expressed protein
Length = 196
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 51 FSRLRAKELEEKDYQVCRRSWKKED*QACGRR 146
+ + + KE+EEK V + WKK+ Q ++
Sbjct: 161 YRKRKVKEIEEKSRAVTNKKWKKKGNQTTNKK 192
>At5g30495.1 68418.m03659 expressed protein
Length = 196
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 51 FSRLRAKELEEKDYQVCRRSWKKED*QACGRR 146
+ + + KE+EEK V + WKK+ Q ++
Sbjct: 161 YRKRKVKEIEEKSRAVTNKKWKKKGNQTTNKK 192
>At3g58220.1 68416.m06491 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 487
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 321 KSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEQRTIKPAER-RKDYHQ 497
++ G + E SKK R + ++ ++ K +EEG+ E+ + E +KD
Sbjct: 240 RTRGGFEYESEPVSKKDYEERPRESFEYESEAESKKDSEEGSRERYEYESEEESKKDSEN 299
Query: 498 ACGRRS 515
CG S
Sbjct: 300 DCGEES 305
>At3g27080.1 68416.m03387 mitochondrial import receptor subunit
TOM20-3 / translocase of outer membrane 20 kDa subunit
3 (TOM20-3) identical to mitochondrial import receptor
subunit TOM20-3 SP:P82874 from [Arabidopsis thaliana]
Length = 202
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 237 EERRLQPPKETNYLWCVGQMIVLLQFLVKSTGASKKERSLTSKKKQACREEK 392
EE L PK+ +WC+G FL +K L ++ Q +E+
Sbjct: 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +1
Query: 385 KKNTTKELEERRLSSPRKKELENRGLSNLRKGERTIIKHAEEGAVEDRGIKLAEGTGRKR 564
+K+ T+ +E+ + R+K+ ++ L LR+GE + E EDR +L E
Sbjct: 1124 EKDKTRAMEKNE-TVERRKQTKDGSLGKLREGEDPELGGHERRGEEDRIEELVE-----T 1177
Query: 565 TIKPAEDELKKEDYQACGRNMTT 633
I ++++KK+D R+ T
Sbjct: 1178 EISDHKEKVKKKDEDYILRSQDT 1200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,206,143
Number of Sequences: 28952
Number of extensions: 277611
Number of successful extensions: 1222
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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