Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I06
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    29   0.37 
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   1.5  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    26   3.4  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   6.0  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.9  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -1

Query: 411 HVTCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQHGLPDISDC*EKA*NFIKQLL 232
           HV  N +      V    A+K Y +H  ++W     + +  LP +SD  E   N+ ++++
Sbjct: 136 HVHKNDINRFGTKVYEELARK-YPQHSLESWRQHYKYMKKRLPPVSDSDES--NYCQRII 192

Query: 231 MKFTSSQ 211
           +K  SSQ
Sbjct: 193 VKPYSSQ 199


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 115 PQFHRYNYPKLLYFYKNIEIKILHSL 38
           P+FH    P ++Y  + +EI++L +L
Sbjct: 561 PRFHHQLMPNIVYIDETVEIEVLRAL 586


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 65  IFVKIQKLWIIVPMKLW*EICQLFLDDFRFLNISIMHNIL 184
           + +K+     +VP+K W    QL L D   L   +++NI+
Sbjct: 1   MLLKVSSCEPLVPIKQWIHTSQLDLSDSSSLVADLLYNII 40


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +1

Query: 244 YEISSLFSTVANIWQSMLTVIFPSVPSVKLVAFVNLLCARSCHANVVSQ*LITSHVAILS 423
           +++ S FST  ++ Q M+  +   +   +LVAF     A    A V  +  +  H A L 
Sbjct: 263 FDLRSAFSTYLSLNQPMVVSVILPIFKRQLVAFACEGMAGLIFAKVTPEKRLLFHSA-LK 321

Query: 424 RSGPGAAPVFV-IDLEEAVVS 483
            SGP    V +  D ++ ++S
Sbjct: 322 LSGPVLDAVLLDTDTDQILIS 342


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/35 (22%), Positives = 23/35 (65%)
 Frame = +1

Query: 250 ISSLFSTVANIWQSMLTVIFPSVPSVKLVAFVNLL 354
           + +LF+T+A  W+++ T ++     ++L+ +++ L
Sbjct: 20  LGTLFTTLAVYWRAITTFLYVGPFGLELILYLSFL 54


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 53  FYFYIFVKIQKLWI 94
           +Y YI VK++K WI
Sbjct: 78  YYLYISVKVRKAWI 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,380
Number of Sequences: 5004
Number of extensions: 36152
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)