Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I06
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0149 + 989698-991797                                             31   0.48 
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    30   1.1  
03_02_0583 + 9635002-9637299                                           29   2.0  
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032...    27   6.0  

>05_01_0149 + 989698-991797
          Length = 699

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 464 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 363
           RS TNTG  P   + R+ T +V  + L T+ W+L
Sbjct: 401 RSFTNTGRMPELFVMRLGTIMVTGFILATIFWRL 434


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 480 DYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDIS 373
           D+ ++Q+ D+    +G+ P K C+VTC N+ +T+DI+
Sbjct: 137 DFDIYQVLDQ----SGNVPAKLCNVTCPNRGITEDIA 169


>03_02_0583 + 9635002-9637299
          Length = 765

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 464 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 363
           R+ TNT   P   L R+AT +V ++ L T+ W+L
Sbjct: 466 RAFTNTRRTPELFLIRLATVVVTAFILATVFWRL 499


>08_02_0416 +
           16902153-16902430,16903089-16903143,16903174-16903232,
           16903565-16903655
          Length = 160

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 294 VDSDFSIRTKRQTCGVCKSSLRT 362
           V +  ++ T+ QTCG  K SLRT
Sbjct: 82  VATPHTVETQHQTCGAVKQSLRT 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,465,449
Number of Sequences: 37544
Number of extensions: 203850
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)