Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I06
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          29   2.0  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         29   2.7  
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           27   6.1  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.2  
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)                    27   8.1  
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)              27   8.1  

>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -1

Query: 462 IND-KYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKI--YKRHKFDAWYGWKNHCQH 292
           +ND K  C  G T GKDCH+  N+  ++      TC   +  Y     D + G   +C+ 
Sbjct: 424 VNDYKCSCLQGYT-GKDCHIDINECSSNPCQYGGTCLNLLNGYACLCIDGYTGL--NCE- 479

Query: 291 GLPDISDC 268
              DI DC
Sbjct: 480 --KDIDDC 485


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 453  KYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKI 346
            K  CSTG T GK+C V  ++  T      ATC  +I
Sbjct: 1539 KCQCSTGYT-GKNCEVNIDECATKPCLNGATCVDQI 1573


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 192  MFIRILCIILMFKKRKSSRNSWQISYHNFIGTIIQSFCI 76
            M   I+C++L  KK   +R ++   + N++  I+ S C+
Sbjct: 1828 MLFVIICLVLEIKKAVGTRCTYFRKFGNWLEIILLSLCV 1866


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 24.6 bits (51), Expect(2) = 6.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 318  YGWKNHCQHGLPDIS 274
            YGW N C HG   +S
Sbjct: 2165 YGWNNCCTHGATPMS 2179



 Score = 21.0 bits (42), Expect(2) = 6.2
 Identities = 9/36 (25%), Positives = 13/36 (36%)
 Frame = -1

Query: 399  NQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQH 292
            N   T +      C  K    + +  + GW N C H
Sbjct: 2118 NNCCTHEYGWNNCCNNKYRWNNCYTHYNGWSNCCSH 2153


>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
          Length = 870

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -1

Query: 405 TCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQH 292
           TC+ L    +S +  C+  +      + W  WKN   H
Sbjct: 351 TCDSLAVRKLSDSKACSSAVNSLRIVNDWKAWKNRDDH 388


>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
          Length = 546

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 417 DCHVTCNQLLTDDISVAATCAKKIYKRHKF 328
           D +V+ N+  TD++++A+TCA+ +    KF
Sbjct: 108 DENVSNNEPHTDNVNIASTCAEPLADASKF 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,820,792
Number of Sequences: 59808
Number of extensions: 253340
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)