Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I06
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.42 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.42 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 195 KMFIRILCIILMFKKRKSSRNSWQISYHN 109
           K+F++ L  ILM ++ K +R  W +   N
Sbjct: 336 KIFLKYLPTILMMRRPKKTRLRWMMEIPN 364


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 309  SIRTKRQTCGVCKSSLRT*LPR*CRQSVTDYKSRG 413
            S+R+K     +C++S RT +PR  + S  D   RG
Sbjct: 1322 SMRSKALIDQLCRNSRRTPVPRLAQDSSEDESYRG 1356


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 13/65 (20%), Positives = 33/65 (50%)
 Frame = -2

Query: 446 GAAPGPLLERIAT*LVISY*LTTLAWQLRAQRRFTNATSLTLGTDGKITVNMDCQILATV 267
           G A G  L  + + +V++  ++T  W L  ++    +++ ++  D K+T +   ++   +
Sbjct: 53  GIASG--LSAMLSLVVVTVAISTGEWLLTEEKLPKTSSNASVEPDSKVTYSGLWRVCVAI 110

Query: 266 EKRLE 252
             R+E
Sbjct: 111 SSRME 115


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 477 YGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDISVAA 364
           Y +  + DKY   +G      CH  C  +L  D + +AA
Sbjct: 460 YKVETVGDKYMAVSGLPEPCRCHARCIARLALDMMDLAA 498


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 477 YGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDISVAA 364
           Y +  + DKY   +G      CH  C  +L  D + +AA
Sbjct: 460 YKVETVGDKYMAVSGLPEPCRCHARCIARLALDMMDLAA 498


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 211 LRTCKFH*KLLYEISSLFSTVANIWQSMLTVIF 309
           L TC F      E + +F T   IW  ++ +IF
Sbjct: 203 LTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIF 235


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 140 DDFRFLNISIMHNI 181
           +D+R L++  +HNI
Sbjct: 74  EDYRILDVDWLHNI 87


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 211 LRTCKFH*KLLYEISSLFSTVANIWQSMLTVIF 309
           L TC F      E + +F T   IW  ++ +IF
Sbjct: 203 LTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIF 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,071
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)