Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I06
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1) (...    29   2.2  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    27   6.6  
At5g13580.1 68418.m01570 ABC transporter family protein                27   8.8  

>At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1)
           (FBL1) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to transport inhibitor response 1 GI:2352492
           from [Arabidopsis thaliana]
          Length = 594

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 202 KLQLRTCKFH*KLLYEISSLFSTVANIWQSMLTVIF 309
           KL++R C F  K L   +S   T+ ++W S  +V F
Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 46  VVFLFLYFCKNTKALDN 96
           V+FL++Y CK  K +DN
Sbjct: 346 VIFLYIYRCKKNKIVDN 362


>At5g13580.1 68418.m01570 ABC transporter family protein
          Length = 727

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 470 SSRSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 363
           + RSMTN+   P     R+   LV  + L T+ WQL
Sbjct: 427 AKRSMTNSRRQPELFGIRLGAVLVTGFILATMFWQL 462


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,632,047
Number of Sequences: 28952
Number of extensions: 176388
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)