Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I05
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)             149   2e-36
SB_39426| Best HMM Match : C4 (HMM E-Value=0)                         133   1e-31
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   5e-19
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)                     47   1e-05
SB_10559| Best HMM Match : HAT (HMM E-Value=2)                         31   0.91 

>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score =  149 bits (361), Expect = 2e-36
 Identities = 63/109 (57%), Positives = 79/109 (72%)
 Frame = +1

Query: 1    HSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEG 180
            HSQ++ +P CP GWS LW GYSF+MHT          L+SPGSCLEDFRA PFIEC+G  
Sbjct: 1731 HSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLEDFRAHPFIECHGR- 1789

Query: 181  GTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERVSRCAVCIKN 327
            GTCH++ +  SFWL T++ ++QF +P  +TLK+G L ERVSRC VC KN
Sbjct: 1790 GTCHYYGSTYSFWLATVDQNKQFRIPRPETLKAGNLRERVSRCQVCQKN 1838



 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 38/106 (35%), Positives = 52/106 (49%)
 Frame = +1

Query: 1    HSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEG 180
            HSQT+ +P CP     LW GYS +++           L SPGSC++ F  +PF+ CN   
Sbjct: 1580 HSQTVRVPRCPEDRPPLWEGYS-LLYVQGNERAHGQDLGSPGSCIQRFSTMPFLFCNINN 1638

Query: 181  GTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERVSRCAVC 318
                   N  SFWL+T E      MP ++T     +   + RCAVC
Sbjct: 1639 VCNLASRNDYSFWLSTPEPIPM--MPVQET----NVQPYIGRCAVC 1678



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +1

Query: 1    HSQTLDIPGCPVGWSELWIGYSFVM 75
            HSQ++ +P CP GWS LW GYSF+M
Sbjct: 1688 HSQSITVPSCPSGWSPLWQGYSFLM 1712


>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
          Length = 188

 Score =  133 bits (321), Expect = 1e-31
 Identities = 60/108 (55%), Positives = 72/108 (66%)
 Frame = +1

Query: 1   HSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEG 180
           HSQ+  +P CP GWS LW GYSF+MHT          L S GSCLE FR  PFIEC+G  
Sbjct: 40  HSQSTTLPTCPGGWSSLWSGYSFLMHTGAGGSGTGQSLGSSGSCLESFRPNPFIECHGR- 98

Query: 181 GTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERVSRCAVCIK 324
           GTCH++ANK SFWL T+  +  F   + +TLK+G LL RVSRC VCI+
Sbjct: 99  GTCHYYANKYSFWLATV--NTPFQTQQSETLKAGNLLSRVSRCQVCIR 144


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 43/83 (51%), Positives = 52/83 (62%)
 Frame = +1

Query: 76   HTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEGGTCHHFANKLSFWLTTIEDSQQFAM 255
            HT          L S GSCLE FR  PF EC+G  GTCH++ANK SFWL T+  +  F  
Sbjct: 1582 HTGAGGSGTGQSLGSSGSCLESFRPNPFTECHGR-GTCHYYANKYSFWLATV--NTPFQT 1638

Query: 256  PERQTLKSGRLLERVSRCAVCIK 324
             + +TLK+G LL RVSRC VCI+
Sbjct: 1639 QQSETLKAGNLLSRVSRCQVCIR 1661



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 36/106 (33%), Positives = 54/106 (50%)
 Frame = +1

Query: 1    HSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEG 180
            HSQT   P CP  + +LW GYS +++           L   GSCL+ F  +P++ CN  G
Sbjct: 1466 HSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCNIFG 1524

Query: 181  GTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERVSRCAVC 318
               +   N  S+WL+T  D+Q   MP    +++  +   +SRC VC
Sbjct: 1525 KCNYASRNDYSYWLST--DNQVPMMP----IQASAVEPYISRCTVC 1564


>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
          Length = 176

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +1

Query: 1   HSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 171
           HSQT   P CP  + +LW GYS +++           L   GSCL+ F  +P++ CN
Sbjct: 70  HSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCN 125


>SB_10559| Best HMM Match : HAT (HMM E-Value=2)
          Length = 123

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 78 MHDKTVTNPQFTPSYWATWN 19
          MH   +++P+ TPS+W TW+
Sbjct: 23 MHASQISDPRRTPSFWKTWH 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,666,656
Number of Sequences: 59808
Number of extensions: 337143
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)