Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I04
(642 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 288 7e-77
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 285 5e-76
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 229 6e-59
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 225 9e-58
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 212 5e-54
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 207 2e-52
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 206 3e-52
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 202 4e-51
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 201 1e-50
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 198 7e-50
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 192 5e-48
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 192 8e-48
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 177 2e-43
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 176 3e-43
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 172 7e-42
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 165 6e-40
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 158 9e-38
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 152 8e-36
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 136 3e-31
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 135 7e-31
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 127 3e-28
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 119 5e-26
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 116 4e-25
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 113 3e-24
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 103 3e-21
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 98 1e-19
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 94 3e-18
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 90 4e-17
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 89 6e-17
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 87 3e-16
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 87 3e-16
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 85 1e-15
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 82 1e-14
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 73 8e-12
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 64 3e-09
UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole gen... 43 0.007
UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole gen... 38 0.16
UniRef50_Q5NB71 Cluster: Putative uncharacterized protein P0431F... 36 1.1
UniRef50_A2R4J7 Cluster: Similarity to other proteins; n=11; Eur... 34 2.5
UniRef50_A3C3B6 Cluster: Putative uncharacterized protein; n=3; ... 34 3.4
UniRef50_UPI000049A0BB Cluster: hypothetical protein 6.t00033; n... 33 4.4
UniRef50_UPI0000EBD2B3 Cluster: PREDICTED: hypothetical protein;... 33 5.9
UniRef50_Q08Q80 Cluster: Putative uncharacterized protein; n=1; ... 33 5.9
UniRef50_Q52PH1 Cluster: Golden2-like transcription factor; n=8;... 33 5.9
UniRef50_UPI0000DD80EA Cluster: PREDICTED: hypothetical protein;... 33 7.7
UniRef50_Q47KQ6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.7
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 33 7.7
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 288 bits (707), Expect = 7e-77
Identities = 130/207 (62%), Positives = 153/207 (73%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQPY VS+ AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK W
Sbjct: 49 RQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTW 108
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRWH ++GH +E++PELPLVV DKV+ KTK+AV
Sbjct: 109 RRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAV 168
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
+ L+++KAW+D+ KVY SQR+RAGKGKMRNRRR+QR+GP IIYN+D G+ +AFRNIPGI
Sbjct: 169 LLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGIT 228
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
+ APGGH+GRF IW +S
Sbjct: 229 LLNVSKLNILKLAPGGHVGRFCIWTES 255
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 285 bits (700), Expect = 5e-76
Identities = 129/207 (62%), Positives = 155/207 (74%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQ Y VS+ AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +
Sbjct: 52 RQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTF 111
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRWH Q++GH+++ + E PLVVSD+VQ++ KTKQAV
Sbjct: 112 RRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAV 171
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
IFLRR+K W+D+ KVYKSQR RAG+G MR+RRR+ R+GPL++Y+KD+GL +AFRNIPGIE
Sbjct: 172 IFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIE 231
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
APGGH+GRF+IW +S
Sbjct: 232 TINVDKLNLLKLAPGGHVGRFVIWTES 258
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 229 bits (559), Expect = 6e-59
Identities = 114/213 (53%), Positives = 137/213 (64%), Gaps = 6/213 (2%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQPY VS++AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK W
Sbjct: 48 RQPYAVSEKAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVW 107
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQE---INKTK 355
R+WH ARGH + ++ E+PLV++ +V E I +T
Sbjct: 108 RKWHQKINLGQKRFATVSALAASGVPALLFARGHQISEVAEVPLVINSEVFEGAKIARTA 167
Query: 356 QAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYN---KDKGLTRAFR 526
A L+ + A DV KV S++LRAGKGK+R RR QR+GPL++Y+ K L RAFR
Sbjct: 168 AAAGLLKTVGALKDVEKVKDSRKLRAGKGKLRGRRHRQRRGPLVVYDGATDGKELVRAFR 227
Query: 527 NIPGIEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
N+PG+E APGGHLGRFIIW S
Sbjct: 228 NLPGVETCDVYSLNLLQLAPGGHLGRFIIWSSS 260
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 225 bits (549), Expect = 9e-58
Identities = 112/208 (53%), Positives = 129/208 (62%), Gaps = 6/208 (2%)
Frame = +2
Query: 20 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHX 199
V +AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 30 VPNKAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQ 89
Query: 200 XXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV---QEINKTKQAVIF 370
ARGH V +PE+PLV+S I KT AV
Sbjct: 90 KINLNQKRFATASALAASGSPALLMARGHNVSTVPEVPLVISSTAFADAAIRKTSAAVAL 149
Query: 371 LRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD---KGLTRAFRNIPGI 541
L+ + A +D K S++LRAGKGK+R RR QR+GPL+IYN D K L +AFRNIPG+
Sbjct: 150 LKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVKAFRNIPGV 209
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
E APGGHLGRFI+W S
Sbjct: 210 ETSSVYSMNLLQLAPGGHLGRFIVWTSS 237
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 212 bits (518), Expect = 5e-54
Identities = 103/204 (50%), Positives = 129/204 (63%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQP+ AGHQ SAESWGTGRAVAR+PR+ G GT R+GQ AF N RGG M++P K W
Sbjct: 49 RQPFGRYYLAGHQHSAESWGTGRAVARVPRISGSGTSRNGQAAFANSARGGHMYSPLKVW 108
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRWH ARGH ++ +PELPLVVSD V++I KTK+AV
Sbjct: 109 RRWHRMVNVTQRRFAMCSAIAASSNPSLVLARGHKIDNVPELPLVVSDDVEQIKKTKEAV 168
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
L +KA DV +S+R+R G GK RNRR QR+G LI++++++GL AFRNI G++
Sbjct: 169 KVLAALKASDDVKHSAESKRIRVGSGKARNRRYTQRRGVLIVHDQNEGLANAFRNISGVD 228
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIW 616
+ APGGHLGRFIIW
Sbjct: 229 ISNVXRLNIRDLAPGGHLGRFIIW 252
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 207 bits (506), Expect = 2e-52
Identities = 100/208 (48%), Positives = 128/208 (61%), Gaps = 1/208 (0%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQ + V+ +AG Q SAESWGTGRAVARIPRV G GTHRSGQ AFGN CR GRM P K W
Sbjct: 50 RQAHAVNPQAGMQHSAESWGTGRAVARIPRVSGSGTHRSGQAAFGNQCRKGRMSLPIKVW 109
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRWH ARGH + ++P++PLVV DK++ KT A+
Sbjct: 110 RRWHRRVNIKQKRHAAATAVAATGIVPLVLARGHRISQVPQIPLVVEDKIESYEKTTDAL 169
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIY-NKDKGLTRAFRNIPGI 541
FL+R A+ DV KV ++ +RAG K R ++ RKGPL++Y N++ L +AFRN+PG+
Sbjct: 170 NFLKRFGAFEDVQKVVSTKVVRAGISKQRGKKYRVRKGPLVVYFNENAKLLKAFRNVPGV 229
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
E+ APGG LGRF+IW +S
Sbjct: 230 EVVNVTRLNLLQLAPGGQLGRFVIWTQS 257
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 206 bits (504), Expect = 3e-52
Identities = 100/206 (48%), Positives = 125/206 (60%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
R PY V AG++TSAESWGTGRAVARIPRV GGGTHR+GQ AFGNMCRGG MF PTK W
Sbjct: 49 RHPYAVKLGAGYETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIW 108
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRW ARGH + + E+PLV S+ ++ + KTK A+
Sbjct: 109 RRWGRKINLKEKRYAVCSSIAASGITSLVLARGHRISNLKEVPLVASNDIESMQKTKDAL 168
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
FL + +V ++ KS +LRA GKMRNR+ GPLIIY+ D G+ +AFRNIPG++
Sbjct: 169 KFLISLGLRDEVNRLIKSXKLRARXGKMRNRKYKISNGPLIIYSXDSGIKKAFRNIPGVD 228
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDK 622
+ APGG +GR IW +
Sbjct: 229 LCNVTKLNLLKLAPGGSIGRLCIWSE 254
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 202 bits (494), Expect = 4e-51
Identities = 103/209 (49%), Positives = 131/209 (62%), Gaps = 2/209 (0%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQP VS +AG Q SA SWGTGRAVARIPR+ G G+ R+GQGAFGNM R G MF+P K +
Sbjct: 49 RQPEGVSTKAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNF 108
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDK-VQEINKTKQA 361
R+W ARGH + +P++PLVV+ K + I KTKQA
Sbjct: 109 RKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQA 168
Query: 362 VIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIY-NKDKGLTRAFRNIPG 538
V L++I A+SDVLKV S+ +RAG+GKMR R+ +RKGPL++Y N D +AFRNIPG
Sbjct: 169 VYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPG 228
Query: 539 IEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
++ APG H+GRFIIW +S
Sbjct: 229 VDTCRVENLSVLNLAPGCHIGRFIIWTES 257
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 201 bits (491), Expect = 1e-50
Identities = 102/208 (49%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQ Y VS +AGHQ SAESWGTGRAVARIPRV GT RSGQGAFGNMCRGG MF+P K +
Sbjct: 50 RQAYGVSTKAGHQHSAESWGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTY 109
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RR+H ARGH + +PELPLV+S+++Q INKT AV
Sbjct: 110 RRFHRKINTTEKRHAVAAAIAATGCPSLVMARGHRINNVPELPLVISNEIQNINKTSTAV 169
Query: 365 IFLRRI-KAWSDVLK-VYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPG 538
F + K + +K + S +R GKGKMRNRRRV GPL++Y +D G+ +A RNI G
Sbjct: 170 EFFKNFGKGLEEEMKRIESSIAIRCGKGKMRNRRRVCAVGPLVVYAEDNGIVKAMRNIKG 229
Query: 539 IEMXXXXXXXXXXXAPGGHLGRFIIWDK 622
++ APGG GR I+ K
Sbjct: 230 VDTCSVERLNLLRLAPGGTFGRLTIFTK 257
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 198 bits (484), Expect = 7e-50
Identities = 98/197 (49%), Positives = 124/197 (62%)
Frame = +2
Query: 2 ARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKP 181
+RQ Y V++ +G SA SWGTGRAVARIPR+ GGGT SG GAFGNMCRGGRMFAPTK
Sbjct: 47 SRQAYAVNRLSGMNHSAHSWGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKI 106
Query: 182 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQA 361
+RRWH +RGH + +PE+PLVV D +Q KTK+A
Sbjct: 107 FRRWHRKINLHQKRFAVVSALAASSVPSLVMSRGHQIGNVPEVPLVVEDSIQGYEKTKEA 166
Query: 362 VIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGI 541
+ FL+ I A DV +V S+ +RAG+GKMRNRR V R+GP+++ +KG TRAFRNI G+
Sbjct: 167 MAFLKAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKG-TRAFRNIFGL 225
Query: 542 EMXXXXXXXXXXXAPGG 592
++ APGG
Sbjct: 226 DLANVSALTLLHLAPGG 242
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 192 bits (469), Expect = 5e-48
Identities = 97/207 (46%), Positives = 121/207 (58%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQPY VSK AG Q SAESWGTGRA+AR+PRV+GGGT R+GQGAF N CR GRM PTK
Sbjct: 46 RQPYAVSKNAGMQHSAESWGTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTH 105
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRW +ARGH + + LP++VSD + + KTK AV
Sbjct: 106 RRWARKVVENTKKIAEAMAVAASAQASLVEARGHRISDVKMLPIIVSDDIAKARKTKDAV 165
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
LR + ++ +V KS+ +R GKGKMRNRR QRKG LI++ + + FRNI G++
Sbjct: 166 EILRNLNMTEELKRVEKSRGVRCGKGKMRNRRYTQRKGILIVHGESSEML-GFRNIRGVD 224
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
APGG GR IIW +S
Sbjct: 225 QMSIDSLDLLELAPGGVAGRLIIWTES 251
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 192 bits (467), Expect = 8e-48
Identities = 87/116 (75%), Positives = 101/116 (87%)
Frame = +2
Query: 278 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 457
RG++V+ + E+PLVVSDK+QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR
Sbjct: 5 RGYVVDNVSEIPLVVSDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 64
Query: 458 RRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
RR+ RKGPLIIYNKD+GLTR+FRNIPG++M APGGH+GRF+IW +S
Sbjct: 65 RRLHRKGPLIIYNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQS 120
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 177 bits (430), Expect = 2e-43
Identities = 91/209 (43%), Positives = 121/209 (57%), Gaps = 2/209 (0%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQ Y VSK +G+QTSA SWGTGRA+AR+PRV+GGGTHR+GQ A+ N CR G M+APT+ W
Sbjct: 48 RQAYAVSKMSGYQTSARSWGTGRAMARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTRVW 107
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRWH +RGH +E + E+P+VV D +++INKTK AV
Sbjct: 108 RRWHRKVNLKEKRQALASALAATAVVPVVMSRGHRIEALREVPMVVDDAIEQINKTKDAV 167
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD--KGLTRAFRNIPG 538
L I +++ ++ K G+ R+ R+ + GPLII +G RAFRNIPG
Sbjct: 168 KLLETIGLGAELKRIDKV------TGRARDGRKKRPVGPLIILRATAVEG-KRAFRNIPG 220
Query: 539 IEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
+E+ AP G LGR +W KS
Sbjct: 221 VEVACVERLNLLKLAPAGALGRLCVWSKS 249
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 176 bits (429), Expect = 3e-43
Identities = 85/208 (40%), Positives = 116/208 (55%)
Frame = +2
Query: 2 ARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKP 181
A+QP+ AG + SA SWGTGRA A +PRV G G++R+GQGA+ N CRGG F P
Sbjct: 45 AQQPHANDPMAGKKVSAISWGTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTL 104
Query: 182 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQA 361
RRW QARGH++ ++ E+P+VV D VQEI +T+ A
Sbjct: 105 LRRWFRPVPSRQRKFAIASAIAATAVVPLVQARGHVLGEVKEVPIVVVDAVQEIKRTRDA 164
Query: 362 VIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGI 541
V L+++ + DV +V R+ KGK R +KGPL+IYN+DKG+ +AFRNIPG+
Sbjct: 165 VELLKKVGVYGDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGV 224
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
E AP +GR +W +S
Sbjct: 225 ETISVKALALAKLAPAAQVGRLTVWTES 252
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 172 bits (418), Expect = 7e-42
Identities = 89/204 (43%), Positives = 115/204 (56%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQ Y VS AG TSA SWGTGRAV+R+PRV G GTHRSGQGA N CRGGR+F PT W
Sbjct: 44 RQVYAVSSTAGMGTSAVSWGTGRAVSRVPRVPGSGTHRSGQGAIANFCRGGRIFNPTTIW 103
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
R+WH +RG+ V+ IPE+P V+ D +++I KT+ +
Sbjct: 104 RKWHHKINKNQRKSAIFSAIASSSIVSIIVSRGYRVKTIPEIPFVIEDSIEKIPKTRDLI 163
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
L + S V K ++L++GKGKMRNRR + GPL+++ K ++ RNI I+
Sbjct: 164 KILTTLGINSIVRNKLK-RKLKSGKGKMRNRRFKKPTGPLLVF---KNNLKSLRNIANID 219
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIW 616
APGGHLGR IW
Sbjct: 220 CMKISALNLTKLAPGGHLGRLCIW 243
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 165 bits (402), Expect = 6e-40
Identities = 87/209 (41%), Positives = 118/209 (56%), Gaps = 2/209 (0%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQ Y +S+ +G+QTSA SWGTGRA++R PRV+GGGTHRSGQ A+ N CR G MFAPT+ W
Sbjct: 48 RQAYAISRMSGYQTSARSWGTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRTW 107
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
R WH +RGH VE +PELPLV+ D ++ + KT+ AV
Sbjct: 108 RHWHRKINLKEKRLALAVSVAATASVPLVMSRGHRVESVPELPLVLDDTMETLTKTRDAV 167
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD--KGLTRAFRNIPG 538
L + ++ +V ++R + KGK R GPL++ +G RAFRNIPG
Sbjct: 168 ELLNSMGLADELKRVSVTKRTKR-KGKKR------PVGPLVVMRSTAVEG-KRAFRNIPG 219
Query: 539 IEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
+++ AP G LGR +I+ KS
Sbjct: 220 VDVMSVEHMNLLKLAPAGTLGRLVIFSKS 248
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 158 bits (384), Expect = 9e-38
Identities = 84/207 (40%), Positives = 110/207 (53%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
R PY VS+ AG Q +A SWG GRAVAR+PR GG GA+ N RGG M PT
Sbjct: 45 RTPYAVSRYAGVQCTAHSWGPGRAVARLPRKHGG------IGAYANFARGGHMAHPTTVI 98
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRW +ARGH + +P +PLVV + KTK A+
Sbjct: 99 RRWCRKVNLNQRRYAVASALAASANAALVEARGHRIADVPSIPLVVD--TDNVTKTKDAL 156
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
++ + DV + S+ +RAG+GKMRNRR + RKGPL+IYN + + R FRN+PG++
Sbjct: 157 AIIKAVGVLRDVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTE-DVARGFRNLPGVD 215
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
+ APG H GR I+W KS
Sbjct: 216 LCHVSSIRLLELAPGSHPGRLILWTKS 242
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 152 bits (368), Expect = 8e-36
Identities = 71/148 (47%), Positives = 92/148 (62%)
Frame = +2
Query: 182 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQA 361
WRRWH ARGH VE +PE+PLVV D I KT +A
Sbjct: 111 WRRWHRRVNIKEKRYAVCSAIAASAVPSLLLARGHRVEGVPEVPLVVDDSASSIKKTAKA 170
Query: 362 VIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGI 541
V L+++ A++D+ KV S+ +R+GKGKMRNRR VQR+GPL++Y++D G+TRAFRNIPG+
Sbjct: 171 VELLKQLGAYADIEKVKASRNVRSGKGKMRNRRYVQRRGPLVVYSEDNGVTRAFRNIPGV 230
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
E+ APGGH+GRFIIW KS
Sbjct: 231 ELCSVDRLGLLTLAPGGHVGRFIIWTKS 258
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 136 bits (330), Expect = 3e-31
Identities = 60/64 (93%), Positives = 61/64 (95%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQPY VS EAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +
Sbjct: 166 RQPYAVSVEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVF 225
Query: 185 RRWH 196
RRWH
Sbjct: 226 RRWH 229
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 135 bits (327), Expect = 7e-31
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 1/205 (0%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG-RMFAPTKP 181
RQPY AG +TSAESWG G VA +PRV+G +G+ A GG + APT P
Sbjct: 43 RQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPT-P 101
Query: 182 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQA 361
+ W + RGH+++ +P LP+VV D+++ +NK ++
Sbjct: 102 EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREV 161
Query: 362 VIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGI 541
F + + W+DV + ++R+RAGKGK R RR V+ K LI+ ++D+G+ RN PG+
Sbjct: 162 REFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKLGARNHPGV 221
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIW 616
++ APG H GR ++
Sbjct: 222 DVVEAMHLGVEHLAPGAHPGRLTVF 246
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 127 bits (306), Expect = 3e-28
Identities = 58/118 (49%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Frame = +2
Query: 275 ARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRN 454
ARGH +E +PELPLV+ D + + KT A+ L++ A+ D K S + GKGKMRN
Sbjct: 2 ARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRN 61
Query: 455 RRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
RR + RKGPLI+Y + L +AFRNIPG+E+ APGGHLGRF+IW KS
Sbjct: 62 RRYISRKGPLIVYGMEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKS 119
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 119 bits (287), Expect = 5e-26
Identities = 70/204 (34%), Positives = 98/204 (48%), Gaps = 1/204 (0%)
Frame = +2
Query: 8 QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWR 187
QP V + AG + S ES+G G +ARIPR +G R G F RGGR P K +
Sbjct: 70 QPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEK 126
Query: 188 RWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVI 367
+ H ARGH+VEK+P LP+VV ++IN+ K+A
Sbjct: 127 KLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKK 186
Query: 368 FLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNK-DKGLTRAFRNIPGIE 544
+ W DV + + ++RAGKGKMR RR + K L++ + + L A RN PG++
Sbjct: 187 LFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRNFPGVD 246
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIW 616
+ APGG GR +W
Sbjct: 247 VVAVNNLNILVLAPGGVPGRLTLW 270
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 116 bits (280), Expect = 4e-25
Identities = 67/207 (32%), Positives = 99/207 (47%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQPY + +G S E+WG G AR+PR + G + GGR P KP
Sbjct: 43 RQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGR-----RAVVVPQAVGGRRAHPPKPE 97
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
R+W + R H+ E ELP VVS++++ + +TK
Sbjct: 98 RKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVA 155
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
R I ++DV + + +R RAG+GKMR RR V++K L++ KD G+ +A +N+PG++
Sbjct: 156 EVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVD 215
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
APG H GR +W KS
Sbjct: 216 AVVVKDLNVELLAPGCHPGRLTVWTKS 242
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 113 bits (272), Expect = 3e-24
Identities = 59/206 (28%), Positives = 101/206 (49%)
Frame = +2
Query: 8 QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWR 187
QP+ AG +T+AES+G+GR A +PRV+G S + AF GGR P +
Sbjct: 45 QPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNT 99
Query: 188 RWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVI 367
+H + RGH V ++ ++P V+ D+++ + TK+
Sbjct: 100 IYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETRE 159
Query: 368 FLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEM 547
+ + D+++ K +++++GKGK+R R+ KGPL++ D+G++ RN G+++
Sbjct: 160 IFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDRGISLGARNHAGVDV 219
Query: 548 XXXXXXXXXXXAPGGHLGRFIIWDKS 625
APG H GR I+ KS
Sbjct: 220 VEVNNINAELLAPGTHAGRLTIYTKS 245
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 103 bits (248), Expect = 3e-21
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 1/207 (0%)
Frame = +2
Query: 8 QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWR 187
QP AG +TSAES+G +AR+PRV+ SG+ A GGR+ P +
Sbjct: 51 QPKGRDPNAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNK 105
Query: 188 RWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVI 367
+ +ARGH+ + P+VV+D + + T +
Sbjct: 106 KLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEE 165
Query: 368 FLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLII-YNKDKGLTRAFRNIPGIE 544
FL++I + DV +V + R+RAGKGKMR R+ + GPLII ++ + + +A RN+ G++
Sbjct: 166 FLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVD 225
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
+ APG H GR I+ +S
Sbjct: 226 VVNAKDVSVIHLAPGAHPGRLTIYTES 252
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 98.3 bits (234), Expect = 1e-19
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Frame = +2
Query: 320 VSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIY-N 496
V DK++ KTK A+ FL+R A+ DV KV ++ +RAG K R ++ RKGPL++Y N
Sbjct: 1 VEDKIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFN 60
Query: 497 KDKGLTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
++ L +AFRN+PG+E+ APGG LGRF+IW +S
Sbjct: 61 ENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQS 103
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 93.9 bits (223), Expect = 3e-18
Identities = 51/172 (29%), Positives = 84/172 (48%)
Frame = +2
Query: 32 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 211
+G+Q SA+SWG GR +ARIPR++G GT ++GQGA NMCRGGR+F ++W+
Sbjct: 59 SGNQVSAKSWGPGRGLARIPRIKGSGTRKAGQGALANMCRGGRLFGNRNYSKKWNIKTNR 118
Query: 212 XXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAW 391
+RGH ++ + P+++ ++ I + ++ L+ +
Sbjct: 119 KVKVSAFKTALLSTLFETLVVSRGHSLKDVKNFPMIIDSILKYIWHPSELLMLLKLYGGY 178
Query: 392 SDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEM 547
SD K S A + K + GPLII ++ L +N G+E+
Sbjct: 179 SDFKKAMIS---HAKRKKHLASSNTCKNGPLIIVDQVGDLFYLTQNTAGLEV 227
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 90.2 bits (214), Expect = 4e-17
Identities = 38/64 (59%), Positives = 52/64 (81%)
Frame = +2
Query: 329 KVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG 508
KV+ KTK+ V+ L+++KAW+D+ KVY SQR+RAGKGKMRNRR +QR+G IIYN+D G
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIYNEDNG 157
Query: 509 LTRA 520
+ +A
Sbjct: 158 IIKA 161
Score = 60.1 bits (139), Expect = 4e-08
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 8 QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 109
QPY VS+ AG+QTSAESWGTGRA +PRVRGGG
Sbjct: 40 QPYAVSESAGYQTSAESWGTGRARGPMPRVRGGG 73
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 89.4 bits (212), Expect = 6e-17
Identities = 58/204 (28%), Positives = 93/204 (45%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQPY S AG + + G ++R+PR+ GG A G G+ +
Sbjct: 45 RQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTT 99
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
+ + + RGH ++ +LP+VV D V+ INKTK A+
Sbjct: 100 KNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAI 159
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
L+ + + D+ + + + +RAG+GKMR RR Q K LI+ + +AFR++PG++
Sbjct: 160 ALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIVARNSSAM-KAFRSLPGVD 218
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIW 616
+ APGG GR I+
Sbjct: 219 IASPNSLSIRKLAPGGVGGRLTIF 242
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 87.4 bits (207), Expect = 3e-16
Identities = 36/60 (60%), Positives = 51/60 (85%)
Frame = +2
Query: 275 ARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRN 454
++GH + ++PELPLVV DKV+ KT++AV+ L+++KAW+D+ KVY SQR+RAGKGKMRN
Sbjct: 2 SKGHRIGEVPELPLVVEDKVEGYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 61
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 87.0 bits (206), Expect = 3e-16
Identities = 63/205 (30%), Positives = 90/205 (43%), Gaps = 2/205 (0%)
Frame = +2
Query: 8 QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWR 187
QP AG +TSA S G GR VAR+PR++G S + A NM RGGR P + +
Sbjct: 57 QPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEK 111
Query: 188 RWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV-QEINKTKQAV 364
+ RGH LP+V+ V +I+ ++A
Sbjct: 112 VLKEYINKKEKRLATISAISATSREDLVRQRGHRFSA-ETLPIVLDSSVLAKISTAREAR 170
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGI 541
L + + DVL+ + +R AGKGKMR RR K L + + L A + +PG+
Sbjct: 171 SLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGV 230
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIW 616
++ APGGH GR I+
Sbjct: 231 DVVTPTLLSVLHLAPGGHPGRLTIY 255
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 85.4 bits (202), Expect = 1e-15
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 12/218 (5%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSA------ESWGT--GRAVARIPRV---RGGGTHRSGQGAFGNMCR 151
RQPY S AG Q SA SW T GR ++R+ R R G +
Sbjct: 43 RQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRAILRRHGALFYWVARNIAQAVK 102
Query: 152 GGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDK 331
G + P K + W+ +ARGHI++K +P+VV D
Sbjct: 103 GKKAHPP-KAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DG 158
Query: 332 VQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNK-DKG 508
++++ KTK+ L ++ ++ +VY+ +R RAGKGK R R ++RKGPLI+ N ++
Sbjct: 159 LEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQ 217
Query: 509 LTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWDK 622
L +A NIPG+++ APG GR +I K
Sbjct: 218 LFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLIISK 255
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 82.2 bits (194), Expect = 1e-14
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 2/208 (0%)
Frame = +2
Query: 8 QPYCVSKEAGHQTSAESWG--TGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKP 181
QP AG SA+S TG ARI R++GGG R G+ RGGR P K
Sbjct: 44 QPKGTHPTAGMDVSADSLNPPTGHGQARIARMKGGGGRRRGEAGEVASIRGGRQAHPPKV 103
Query: 182 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQA 361
+ H RGHI++ I ELP+V+SD ++ ++K +
Sbjct: 104 QKVIHKKINKKEKKLALCSAIAATASKSTVAGRGHIIDGI-ELPIVISDDIESVSKASEV 162
Query: 362 VIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGI 541
L + ++DV ++ + ++ R GK +R R + K L + D + RA PG+
Sbjct: 163 RKILSALGLFADVNRL-EGRKPRTGKSALRGRPKKIGKSILFVVGADGPVIRAVGGFPGV 221
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
APG R ++ K+
Sbjct: 222 TARPARDLSVLDLAPGAEPARLTVYSKA 249
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 72.5 bits (170), Expect = 8e-12
Identities = 56/214 (26%), Positives = 84/214 (39%), Gaps = 15/214 (7%)
Frame = +2
Query: 29 EAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXX 208
+AG + S E WG GR V+RI R G T A RGGR K + W
Sbjct: 90 QAGMKHSVEWWGKGRGVSRIMRKAGQRT-----AAQNPHTRGGRRAHGPKVDKDWSQKIN 144
Query: 209 XXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEIN-------------- 346
RGH E P+++ V+
Sbjct: 145 SKENRIARDSAIAASASSNLVSERGHHFEASLRFPIIIDGYVESREGGDEKYDLESLPLQ 204
Query: 347 -KTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAF 523
T++ V + + +D+ + + +RAGKG MR R+ K L++ ++ GL +A
Sbjct: 205 YSTRKFVAMMEGLGLGADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTNGLAKAA 264
Query: 524 RNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
RNIPG+++ APGG GR +W K+
Sbjct: 265 RNIPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKA 298
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 64.1 bits (149), Expect = 3e-09
Identities = 53/207 (25%), Positives = 92/207 (44%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
+Q Y + AG +T AES+G+GR A +P+ + G R Q GR P K
Sbjct: 43 KQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTE 95
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
+ RGH ++ E+P+VVSD +++ KT++ V
Sbjct: 96 KDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVV 154
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
L + +D+ + ++ +++AG+G R R+ +R ++ D+ T A RN+ G +
Sbjct: 155 SLLEALDVHADIDRADET-KIKAGQGSARG-RKYRRPASILFVTSDEPSTAA-RNLAGAD 211
Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
+ APGG GR ++ +S
Sbjct: 212 VATASEVNTEDLAPGGAPGRLTVFTES 238
>UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_113, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 42.7 bits (96), Expect = 0.007
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 275 ARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLK 406
ARGH +E + ELPLV+ D + ++KT + L+++ A DV K
Sbjct: 24 ARGHRIESVLELPLVIGDSTKSVDKTSTTIDILKQVGACPDVEK 67
>UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 131
Score = 38.3 bits (85), Expect = 0.16
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -1
Query: 177 LVGANIRPPRHMLPNAPCP 121
LVGANI PPRHMLP AP P
Sbjct: 106 LVGANILPPRHMLPKAPWP 124
>UniRef50_Q5NB71 Cluster: Putative uncharacterized protein
P0431F01.18; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0431F01.18 - Oryza sativa subsp. japonica (Rice)
Length = 320
Score = 35.5 bits (78), Expect = 1.1
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 80 ARIPRVRGGGTHRSGQGAFGNMCRGG 157
AR PR GGG HR GA G + RGG
Sbjct: 201 ARRPRAAGGGKHRGAHGANGGVARGG 226
>UniRef50_A2R4J7 Cluster: Similarity to other proteins; n=11;
Eurotiomycetidae|Rep: Similarity to other proteins -
Aspergillus niger
Length = 1372
Score = 34.3 bits (75), Expect = 2.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 168 ANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 49
AN P + P + P + VPPP + ATA P P +A
Sbjct: 635 ANQTPNNYPQPTSTTPSVQVPPPAAAAVAATASPAPAPAA 674
>UniRef50_A3C3B6 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 150
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 50 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 160
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>UniRef50_UPI000049A0BB Cluster: hypothetical protein 6.t00033; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 6.t00033 - Entamoeba histolytica HM-1:IMSS
Length = 980
Score = 33.5 bits (73), Expect = 4.4
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Frame = +2
Query: 284 HIVEKIP-ELPLVVSDKVQE--INKTKQAVIFLRRIKAWSDVLKVYKSQR 424
H+++KI EL V +++ ++ INK K AV L+RI+A ++ K+ KSQR
Sbjct: 219 HMIKKIERELDQVENEEERKKLINKQKTAVTMLKRIEARVNIHKLRKSQR 268
>UniRef50_UPI0000EBD2B3 Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 152
Score = 33.1 bits (72), Expect = 5.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 159 RPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSAL 46
RPP LP A CP W+PP + G+ +P PQ AL
Sbjct: 90 RPPAQALPGA-CPPTWLPPCLSAGLH---QPRPQPPAL 123
>UniRef50_Q08Q80 Cluster: Putative uncharacterized protein; n=1;
Stigmatella aurantiaca DW4/3-1|Rep: Putative
uncharacterized protein - Stigmatella aurantiaca DW4/3-1
Length = 596
Score = 33.1 bits (72), Expect = 5.9
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 156 PPRHMLPNAPCPDLWV--PPPRTRGIRATARPVP 61
PP LP P PD +V PPP+ G A PVP
Sbjct: 352 PPGEALPPEPVPDSFVAEPPPQAAGFAPQAGPVP 385
>UniRef50_Q52PH1 Cluster: Golden2-like transcription factor; n=8;
Poaceae|Rep: Golden2-like transcription factor - Zea
mays (Maize)
Length = 469
Score = 33.1 bits (72), Expect = 5.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 153 PRHMLPNAPCPDLWVPPPR 97
PRH+ P AP P W PPP+
Sbjct: 325 PRHLAPRAPPPPPWAPPPQ 343
>UniRef50_UPI0000DD80EA Cluster: PREDICTED: hypothetical protein; n=3;
Homo/Pan/Gorilla group|Rep: PREDICTED: hypothetical
protein - Homo sapiens
Length = 1559
Score = 32.7 bits (71), Expect = 7.7
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Frame = -3
Query: 310 QLGNLLNNMPSSLNEGRYPGRCHGGGHGSTSLP*VHATVPAPPR---LGRRE---HTSAA 149
Q G L+ P+S + R G G G ++S P A PAP R GRRE T+AA
Sbjct: 1334 QKGCLIKRKPASEGDCRRAGAAQGSGRAASSAP---APAPAPARAELAGRRETPGATAAA 1390
Query: 148 A---HVTECTLP 122
A V +C+ P
Sbjct: 1391 APSPSVAQCSRP 1402
>UniRef50_Q47KQ6 Cluster: Putative uncharacterized protein; n=1;
Thermobifida fusca YX|Rep: Putative uncharacterized
protein - Thermobifida fusca (strain YX)
Length = 168
Score = 32.7 bits (71), Expect = 7.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 171 GANI-RPPRHMLPNAPCPDLWVPPPRTRGIRATARPVP 61
GA++ R ML + P P W PPR GI T R +P
Sbjct: 118 GAHLGREASWMLSSGPSPRAWGSPPRFSGIPTTGRSIP 155
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 32.7 bits (71), Expect = 7.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 130 CIR*HVPRRTYVRADQAVEALAPSREPTAE 219
C+R HVP +VRAD+ + LAP +P E
Sbjct: 142 CVRQHVPWWPHVRADEDLPPLAPQDQPAPE 171
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,625,744
Number of Sequences: 1657284
Number of extensions: 11577425
Number of successful extensions: 41350
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 38769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41256
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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