Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I04
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   277   7e-76
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   277   1e-75
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    26   4.0  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   5.3  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   7.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   9.3  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  277 bits (680), Expect = 7e-76
 Identities = 125/207 (60%), Positives = 149/207 (71%)
 Frame = +2

Query: 5   RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
           RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK W
Sbjct: 49  RQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTW 108

Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
           R+WH                          ARGH +E+IPE+PLVV D VQ   KTK+AV
Sbjct: 109 RKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAV 168

Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
             L+ IKA+ DV+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AFRNIPG+E
Sbjct: 169 ALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVE 228

Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
           +           APGGHLGRF+IW KS
Sbjct: 229 IVNVRRLNLLQLAPGGHLGRFVIWTKS 255


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  277 bits (679), Expect = 1e-75
 Identities = 125/207 (60%), Positives = 149/207 (71%)
 Frame = +2

Query: 5   RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
           RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK W
Sbjct: 49  RQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTW 108

Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
           R+WH                          ARGH +E+IPE+PLVV D VQ   KTK+AV
Sbjct: 109 RKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAV 168

Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
             L+ IKA+ DV+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AFRNIPG+E
Sbjct: 169 ALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVE 228

Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
           +           APGGHLGRF+IW KS
Sbjct: 229 IVNVRRLNLLQLAPGGHLGRFVIWTKS 255


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 238 GGHGSTSLP*VHATVPAPPRLGRREHTSAAAHVTECTLPR 119
           G H       V AT+P PP  G R   S A  +  CTLP+
Sbjct: 42  GAHEIPGSTGVFATMPRPPLEGCRWRCSIA--LPNCTLPK 79


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 610 DEPAEMAAGCQLQEVQLVHVEHLDARDVAECTSQTLVLIIDDKGSFA 470
           +E A +AA     EVQ+VH E    R  A    ++ VL  ++K + A
Sbjct: 513 NEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVA 559


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 218 SAVGSRDGASASTAWSARTYVRRGTCYRMHPAQIC 114
           S V S   ++  +  S  T+V   T Y++ P QIC
Sbjct: 132 STVSSTPVSTIYSGTSGTTFVSSSTTYQVIPTQIC 166


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 295 LNNMPSSLNEGRY-PGRCHGGGHGSTSLP*VHATVPA 188
           L N+P +L   RY     HG  HGS S P     VP+
Sbjct: 47  LYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPS 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,285
Number of Sequences: 5004
Number of extensions: 38914
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)