Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I04
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 252 1e-67
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 251 3e-67
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.083
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.11
07_03_1721 - 29023979-29025295 29 2.4
03_05_0366 - 23505755-23506441 29 2.4
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 29 4.1
06_03_0865 - 25516072-25517007 29 4.1
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.1
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 5.5
03_01_0092 - 731069-731434,731569-733080 28 7.2
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 28 7.2
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 27 9.6
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 9.6
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 27 9.6
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 27 9.6
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 9.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 252 bits (618), Expect = 1e-67
Identities = 114/208 (54%), Positives = 140/208 (67%), Gaps = 1/208 (0%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK W
Sbjct: 53 RQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTW 112
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
R+WH ARGH +E +PELPLV+SD + I KT QA+
Sbjct: 113 RKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAI 172
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGLTRAFRNIPGI 541
L+++ A++D K S +R GKGKMRNRR + RKGPLI+Y + + +AFRN+PG+
Sbjct: 173 KILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGV 232
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
++ APGGHLGRF+IW +S
Sbjct: 233 DVANVERLNLLDLAPGGHLGRFVIWTES 260
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 251 bits (615), Expect = 3e-67
Identities = 115/205 (56%), Positives = 139/205 (67%), Gaps = 1/205 (0%)
Frame = +2
Query: 5 RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK W
Sbjct: 52 RQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIW 111
Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
RRWH ARGH +E +PE PLVVSD ++ I KT Q++
Sbjct: 112 RRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSI 171
Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGLTRAFRNIPGI 541
L++I A++D K S +RAGKGKMRNRR + RKGPLI+Y + + +AFRN+PG+
Sbjct: 172 KVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGV 231
Query: 542 EMXXXXXXXXXXXAPGGHLGRFIIW 616
++ APGGHLGRF+IW
Sbjct: 232 DVANVERLNLLDLAPGGHLGRFVIW 256
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.083
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 156 PPRHMLPNAPCPDLWVPPP 100
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 50 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 160
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 183 HGLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 64
+G+VG + PP H +P P P P P GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
>03_05_0366 - 23505755-23506441
Length = 228
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 11 PYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGA 133
P C S E + +AES TG A R R+ G T+ + + A
Sbjct: 134 PRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPTNDNDEEA 174
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 195 CQRLHGLVGANIRPPRHMLPNAPC 124
C L+G VG +IRP + + PN C
Sbjct: 256 CSHLNGPVGHDIRPIKRLKPNQEC 279
>06_03_0865 - 25516072-25517007
Length = 311
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 341 SPGPCPRPLTATRESSQQYAL*PEXXXXXXXXXXXXXRQHVSAVGSRDG 195
SP P P P A S+ QY PE +++++VG R G
Sbjct: 233 SPSPPPPPPPAAAASTTQYPFTPEFAAAMQEMIRAEVHKYMASVGVRAG 281
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 35 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 139
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -3
Query: 262 RYPGRCHGGG---HGSTSLP*VHATVPAPPRLGRRE 164
R+ HGG HG L HA P PP+ RR+
Sbjct: 47 RHEHPAHGGAQHAHGGEQLQLAHARTPTPPQQQRRQ 82
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 153 PRHMLPNAPCPDLWVPPPRTRGIRATARPVP 61
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 135 SVTCAAADVCSRRPSRGGAGTVA*TYGRDVLPWPPP 242
S+TC A V SRR +R G G A R+ PP
Sbjct: 176 SITCGANGVGSRRATRAGKGGAAAAAQREQHACQPP 211
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 207 TYGRDVL-PWPPPWQRPGYRPSFRLEGILLRR 299
TYG +L P+PPP P PS+ EG ++ R
Sbjct: 275 TYGTPLLQPFPPPTPPPSLTPSYN-EGPIISR 305
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +2
Query: 29 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 187
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 231 WPPPWQRPGYRPSFRLEGILLRR 299
WPPP P P L+GIL RR
Sbjct: 231 WPPPSFPPSSTPPSDLDGILSRR 253
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 290 VEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVL 403
V K+PE LV + K+Q + K R + A+S++L
Sbjct: 56 VTKVPETKLVANPKIQNVRDLKSLRRLSRSLLAFSNLL 93
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 108 PPPRTRGIRATARPVPQDSA 49
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,395,445
Number of Sequences: 37544
Number of extensions: 389257
Number of successful extensions: 1636
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -