Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I04
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               262   2e-70
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.2  
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)                    29   4.2  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   5.6  
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)                   28   7.4  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   7.4  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  262 bits (641), Expect = 2e-70
 Identities = 120/200 (60%), Positives = 139/200 (69%)
 Frame = +2

Query: 5   RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
           RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK W
Sbjct: 46  RQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTW 105

Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
           R+WH                          ARGH +EKI E+PLV+SD ++ + KT  AV
Sbjct: 106 RKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAV 165

Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
             L+ + A+ DV K   S+++RAGKGKMRNRR V RKGPLIIYN D+GL +AFRN+PG+E
Sbjct: 166 KLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVE 225

Query: 545 MXXXXXXXXXXXAPGGHLGR 604
           +            PGGHLGR
Sbjct: 226 LQHVDRLNLLKLCPGGHLGR 245


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 44   TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 160
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
          Length = 465

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 147 HMLPNAPCPDLWVPPPRTRGIRATARPVPQ 58
           H +P  P P    PPP TRG   TA P  Q
Sbjct: 383 HPIPTYPAP----PPPTTRGEMTTATPATQ 408


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 62  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 190
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 305 ELPLVVSDKVQEINKTKQAVIF-LRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQ 469
           E+P+ +S  + ++ K KQ ++  +R+    S V+  YK  R   G  K  + + +Q
Sbjct: 284 EMPINLSS-ISDVQKKKQKILSDIRQPNLHSSVIAQYKDYRKHCGNEKCSSNQNIQ 338


>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
          Length = 1074

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 228 PWPPPWQRPGYRPSFR 275
           PWP P + PG RP +R
Sbjct: 480 PWPRPGRTPGRRPGYR 495


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 59  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 190
           WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 24  WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 271 NEGRYPGRCHGGGHGSTSLP*VHATVPAPP 182
           ++G+ P     GGH  T +P +   +PAPP
Sbjct: 377 SQGQQPAPGRQGGHTLTPVPGLPGALPAPP 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,470,223
Number of Sequences: 59808
Number of extensions: 365799
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)