Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I04
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   256   7e-69
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    29   2.1  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  256 bits (628), Expect = 7e-69
 Identities = 117/207 (56%), Positives = 143/207 (69%)
 Frame = +2

Query: 5   RQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 184
           RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +
Sbjct: 48  RQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVF 107

Query: 185 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAV 364
           RRWH                         QARGH+++++ E+PLVVSDKV+   KTK+AV
Sbjct: 108 RRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAV 167

Query: 365 IFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
           +FLRR   W+D+ KVY S+R RAGKGK+RNR+  Q+ GP++IY +D    RAFRNIPG++
Sbjct: 168 VFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVD 227

Query: 545 MXXXXXXXXXXXAPGGHLGRFIIWDKS 625
           +           APGGHLGR IIW +S
Sbjct: 228 VMNVERLNLLKLAPGGHLGRLIIWTES 254


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 532 PWHRDAQREQAEPPEAGTRRPSRQVHHLGQVAFD 633
           PW+        EPP  G+RRPS+Q  +  +++FD
Sbjct: 802 PWYSRDPIVNPEPPSVGSRRPSKQSTNPYRISFD 835


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
 Frame = +2

Query: 20  VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFAPTKP 181
           V K   H+    SW T     +  R  GGG  R   SG    G   RGGR     KP
Sbjct: 144 VQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNGAPKP 200


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = +2

Query: 278 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 457
           R  + EK+ +L   +S + +EIN  K+ V    RIK   D L++ KS+R    +  +R R
Sbjct: 353 RSDVEEKLDKLKDDISSREREINAQKEEV---NRIK---DSLRLEKSKRNELEEEVLRQR 406

Query: 458 RRVQRK 475
           R  Q +
Sbjct: 407 RCAQEE 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,865
Number of Sequences: 27780
Number of extensions: 253869
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)