Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I04
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   251   3e-67
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   250   8e-67
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family...    30   1.5  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    29   2.0  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    29   2.6  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    27   8.0  
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    27   8.0  
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M...    27   8.0  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  251 bits (615), Expect = 3e-67
 Identities = 115/209 (55%), Positives = 139/209 (66%), Gaps = 1/209 (0%)
 Frame = +2

Query: 2   ARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKP 181
           +RQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK 
Sbjct: 53  SRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKI 112

Query: 182 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQA 361
           WRRWH                          ARGH +E +PE+PLVVSD  + + KT  A
Sbjct: 113 WRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAA 172

Query: 362 VIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGLTRAFRNIPG 538
           +  L++I A+ D  K   S  +R GKGKMRNRR + RKGPL++Y  +   + +AFRN+PG
Sbjct: 173 IKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPG 232

Query: 539 IEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
           +E+           APGGHLGRF+IW KS
Sbjct: 233 VELCHVERLNLLKLAPGGHLGRFVIWTKS 261


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  250 bits (611), Expect = 8e-67
 Identities = 114/209 (54%), Positives = 139/209 (66%), Gaps = 1/209 (0%)
 Frame = +2

Query: 2   ARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKP 181
           +RQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK 
Sbjct: 54  SRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKI 113

Query: 182 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQA 361
           WRRWH                          ARGH +E +PE+PLVVSD  + + KT  A
Sbjct: 114 WRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAA 173

Query: 362 VIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPG 538
           +  L++I A+ D  K   S  +R GKGKMRNRR + RKGPL+++  +   + +AFRN+PG
Sbjct: 174 IKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPG 233

Query: 539 IEMXXXXXXXXXXXAPGGHLGRFIIWDKS 625
           +E+           APGGHLGRF+IW KS
Sbjct: 234 VELCHVERLNLLKLAPGGHLGRFVIWTKS 262


>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 340

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 195 CQRLHGLVGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 49
           CQ+  G V   +  P H +P      L  PPP++  +   + P P  S+
Sbjct: 169 CQQSLGFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSS 217


>At2g18470.1 68415.m02151 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 633

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 301 NLLNNMPSSLNEGRYPGRCHGGGHGSTSLP*VHATVPAPP 182
           N  NN PS  ++G    R +GG +G    P    + P+PP
Sbjct: 66  NSSNNSPSPPSQGGGGERGNGGNNGGNDTPPSRGSPPSPP 105


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 156 PPRHMLPNAPCPDLWVPPP 100
           PP    P  PCPD++ PPP
Sbjct: 385 PPYAYSPPPPCPDVYKPPP 403


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +2

Query: 20  VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 184
           + +  G + +AE   + + + ++P   G G    G+   G FGN   GG  F     W
Sbjct: 81  IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -2

Query: 176 WSARTYVRRGTCYRMH--PAQICXXXXXXXXXXGLQHDRYPKTRRWFDD 36
           WS +  + + +CYRM   PAQ C           +  D + K  +W  D
Sbjct: 257 WSKKPVIEQNSCYRMQWGPAQRCEGWKSRDDEETV--DSHVKCEKWIRD 303


>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 442

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 425 LRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 544
           L+ G  K R+R  VQ +G + +Y+K  G    FR+   ++
Sbjct: 364 LQTGLRKRRSRGAVQVEGGIRLYSKQVGSPAGFRDFGDVD 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,497,824
Number of Sequences: 28952
Number of extensions: 244148
Number of successful extensions: 742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)