Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I01
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 30 1.1
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.4
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 4.2
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 28 4.2
At4g15393.1 68417.m02352 cytochrome P450 family protein similar ... 28 4.2
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ... 27 5.6
At4g28690.1 68417.m04099 expressed protein 27 7.4
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 27 7.4
At1g15940.1 68414.m01913 expressed protein similar To androgen-i... 27 7.4
At5g37600.1 68418.m04529 glutamine synthetase, putative similar ... 27 9.8
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 27 9.8
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ... 27 9.8
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 27 9.8
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 177 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDDPLARGG 326
++A P P+ P+ GP P+S+ PA N+P Y P GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 7 SDTIRQ*KLSCDSSSPYWPWLPQTECTWSIITLII-IQA 120
S I + + SC SSP+ PW+P + +I I+ IQA
Sbjct: 96 SKIIEEKRYSCIISSPFTPWVPAVAASHNISCAILWIQA 134
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 189 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDDPLAR 320
P P S P N P ++ P + P+ +N P PP YD P R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 210 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDDP 311
PS+ PS ++ P TGP+ + HP ++ P D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270
>At4g15393.1 68417.m02352 cytochrome P450 family protein similar to
Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
[Arabidopsis thaliana]; contains Pfam PF00067:
Cytochrome P450
Length = 399
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 228 GNYEPISTGPAFVDFNHPNYPPKRYDDPLA 317
G+Y I G F+ + + ++ P++YDDPLA
Sbjct: 363 GDYT-IPAGWIFMGYPYVHFNPEKYDDPLA 391
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase) [Alfalfa] SWISS-PROT:P04078
Length = 356
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 PDPFFSQPSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDDPLARG 323
P P + PS P NY+ STG A D + YP + DP RG
Sbjct: 41 PGPV-TDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRG 85
>At4g28690.1 68417.m04099 expressed protein
Length = 448
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +3
Query: 90 VDHNPDYNPGQVHVVDN--SGVPSDGNSDHVVIANPDPFFSQPSNG---PSGNYEPISTG 254
V NP P + + N SG + S VV +NP +PSNG P + + IS G
Sbjct: 235 VQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGVYPPENSVQNISQG 294
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 228 GNYEPISTGPAFVDFNHPNYPPKRYDDPL 314
G+Y+ I G F+ + + ++ PK YDDPL
Sbjct: 360 GSYK-IPAGWIFMGYPNNHFNPKTYDDPL 387
>At1g15940.1 68414.m01913 expressed protein similar To
androgen-induced prostate proliferative shutoff
associated protein (GI:4559410) [Homo sapiens]
Length = 990
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/68 (25%), Positives = 25/68 (36%)
Frame = +3
Query: 93 DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDF 272
D PD + +N V + + + A +P +NG N EP + G
Sbjct: 769 DAEPDRMEDHQELPENHNVETKTDGEEQEAAK-EPTAESKTNGEEPNAEPETDGKEHKSL 827
Query: 273 NHPNYPPK 296
PN PK
Sbjct: 828 KEPNAEPK 835
>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 PDPFFSQPSNGPSGNYEPISTGPA-FVDFNHPNYPPKRYDDPLARG 323
P P + PS P NY+ STG A D YP + DP RG
Sbjct: 41 PGPV-TDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG 85
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 99 NPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNH 278
NP + + D+S P+ + V + NP S P N P + P S ++
Sbjct: 101 NPPESSSNPNPPDSSSNPNSNPNPPVTVPNPPESSSNP-NPPDSSSNPNSNPNPPESSSN 159
Query: 279 PNYPPKRYDDP 311
PN PP +P
Sbjct: 160 PN-PPVTVPNP 169
>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 PDPFFSQPSNGPSGNYEPISTGPA-FVDFNHPNYPPKRYDDPLARG 323
P P + PS P NY+ STG A D YP + DP RG
Sbjct: 41 PGPV-TDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRG 85
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 371 FLLVLKSLIFMRHLLPTTGERVVVSLGWIIGMIEIDERRSSAYGFIIS 228
F +LK+L FM HL E+V V WI + + +Y F IS
Sbjct: 462 FAPILKNLPFMEHLWRHFAEQVKVHHKWIDHLQPSSQSCFLSYRFYIS 509
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,416,372
Number of Sequences: 28952
Number of extensions: 242616
Number of successful extensions: 642
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -