Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H24
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    33   0.011
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    28   0.30 
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   2.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   4.9  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    23   6.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    23   6.5  
SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence orphan|Sc...    23   6.5  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    23   6.5  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    23   8.5  

>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 32.7 bits (71), Expect = 0.011
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 16  MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 150
           MFGK+  LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 1   MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 17  CSGRSSFYCLSLCASAFKAD 76
           C G SSFYCLS+    +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   YTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYI 108
           +T++FG IVFL  +     +  R    +E VY I
Sbjct: 93  WTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVI 126


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 31  VFLLLVALCVGVQSRYLIVSEPVYYI 108
           +F++L+ LC  + S  ++V   +Y+I
Sbjct: 639 MFIMLICLCYSIISPLILVFGLIYFI 664


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -2

Query: 133 IVQAPHSVEYSKQVR*QSGIGFERR 59
           ++ APH + Y  ++  ++G+ FE++
Sbjct: 142 LINAPHYLNYMYKLLIEAGVEFEKK 166


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +3

Query: 84  CQRTCLLYSTL 116
           C+RTC+L++TL
Sbjct: 252 CKRTCILFATL 262


>SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 99

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 241 YSCRNQQRVLELQHQRYY 188
           Y C +Q  + E++  RYY
Sbjct: 26  YFCEDQSNIYEVEDMRYY 43


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 241 YSCRNQQRVLELQHQRYY 188
           Y C +Q  + E++  RYY
Sbjct: 703 YFCEDQSNIYEVEDMRYY 720


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 255 DSAYYILVVTSKGYLNSSTRGTIGLERESSVRVPADS 145
           + A+Y LV T + Y  S  +G    +   + +VPA +
Sbjct: 159 EEAFYSLVRTIRRYNKSEEKGFQNKQAVQTAQVPAST 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,085,614
Number of Sequences: 5004
Number of extensions: 17733
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)