Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H24
         (284 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1365 - 36690267-36692222                                         28   1.0  
07_01_0117 + 894314-896677                                             27   1.8  
01_07_0224 - 42121011-42122486                                         26   5.4  
07_03_1679 + 28616006-28616137,28616651-28616842,28616945-286171...    25   9.4  
05_07_0083 + 27580710-27580767,27580869-27580924,27581024-275811...    25   9.4  
04_01_0146 + 1701744-1701860,1702036-1702112,1702247-1702344,170...    25   9.4  

>01_06_1365 - 36690267-36692222
          Length = 651

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 216 YLNSSTRGTIGLERESSVRVPA 151
           YL+SSTR    LER SSVR P+
Sbjct: 403 YLDSSTRRRRSLERSSSVRRPS 424


>07_01_0117 + 894314-896677
          Length = 787

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 209 TPAPEVLLDLSVRAPCASLRTLELVNSSGSS 117
           T  P++++ L +    ASL+ L+LVNS  S+
Sbjct: 371 TMTPDIVITLVILVSLASLQVLQLVNSLSSN 401


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 19  FGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEP 126
           F +  F+L V LCV + +   IV  P Y +  + +P
Sbjct: 24  FVQFFFVLSVVLCVLLYAPRFIVLTPTYGLDFFPQP 59


>07_03_1679 +
           28616006-28616137,28616651-28616842,28616945-28617110,
           28617195-28617586
          Length = 293

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 255 DSAYYILVVTSKGYLNSSTRGTIGLERESSVRVPADSRA 139
           D+AYY  ++++KG L+S      G   +++VR  A +RA
Sbjct: 221 DNAYYSNLLSNKGLLHSDQVLFNGNSTDNTVRNFASNRA 259


>05_07_0083 +
           27580710-27580767,27580869-27580924,27581024-27581133,
           27582083-27582148,27582149-27582278,27582636-27582737,
           27582969-27583010,27583153-27583194,27583356-27583432,
           27583730-27583856,27583953-27584120,27584359-27584484,
           27584575-27584685,27584776-27584910,27585540-27585614,
           27585827-27585934,27586015-27586101,27586187-27586273,
           27586762-27586830
          Length = 591

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 76  YLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLKSNS 192
           ++I + PVY + +     +L+   +   AH A+TLK+ +
Sbjct: 212 HIIENSPVYPVIYDSNRTVLSLPPIINGAHSAITLKTRN 250


>04_01_0146 +
           1701744-1701860,1702036-1702112,1702247-1702344,
           1704073-1704228,1704671-1705290,1705397-1705458,
           1705551-1705941,1706404-1706575,1706686-1707212
          Length = 739

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 100 YYIQHYEEPELLTSSRVRRDAHGALTLKSNSTSGAGV-QVPFAG 228
           +Y +H    +L    R  RDAHG  T  +++ +GA V  + F G
Sbjct: 194 WYDKHLSAEDLKGEYRSARDAHGHGTHVASTAAGALVPNISFHG 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,889,369
Number of Sequences: 37544
Number of extensions: 112155
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)