Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H24
(284 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34550| Best HMM Match : VWA (HMM E-Value=0) 29 0.60
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.79
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 0.79
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_59025| Best HMM Match : Antimicrobial_5 (HMM E-Value=5.1) 27 3.2
SB_52979| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1) 26 4.2
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26) 26 5.6
SB_26340| Best HMM Match : TP2 (HMM E-Value=4.9) 26 5.6
SB_22631| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_55240| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1) 26 5.6
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 25 7.4
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 25 7.4
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 25 7.4
SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_32536| Best HMM Match : TAFII55_N (HMM E-Value=7.2) 25 9.8
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08) 25 9.8
SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85) 25 9.8
>SB_34550| Best HMM Match : VWA (HMM E-Value=0)
Length = 519
Score = 29.1 bits (62), Expect = 0.60
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 76 YLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLKSNSTSGAGVQVPFAGYDKNIVCA 252
YL +S PV +++ + L AH L L+ + + VP Y K +VCA
Sbjct: 303 YLRISVPVIHVRTMRSAKTLDQ---HSPAHARLDLQEIYVTRPSMNVPTRNYAKTVVCA 358
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 28.7 bits (61), Expect = 0.79
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 88 SEPVYYIQ-HYEEPELLTSSRVRRDAHGALTLKSNSTSGAG 207
S+PVY I+ H E L T + +++AH LT+K + G G
Sbjct: 106 SQPVYIIRAHPSELSLTTDTEAQQNAH-PLTIKLKAREGLG 145
>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 1151
Score = 28.7 bits (61), Expect = 0.79
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 151 RRDAHGALTLKSNSTSGAGVQVPF 222
R+DA G L+ +SNST G+ PF
Sbjct: 17 RKDADGRLSPRSNSTPSPGIPSPF 40
>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +1
Query: 40 LLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLKSNSTSGAGVQVP 219
LLV + G + + I+ Y++ H+++ ++ T +R + + T + ST G+G
Sbjct: 6 LLVKIAFGAVTVFAILCVLCYHLNHHQKDDISTKFVMRTIGYSSSTWR--STEGSGTFSK 63
Query: 220 FAGYDKNI 243
+DK +
Sbjct: 64 AGLFDKKL 71
>SB_59025| Best HMM Match : Antimicrobial_5 (HMM E-Value=5.1)
Length = 216
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -2
Query: 142 SLSIVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSRTCL 11
S ++ P ++++S+ R Q IG++ R + I+ R + CL
Sbjct: 107 SYALPTTPATLKHSEAKRRQGKIGYQASRDAKTGIRDRQLQECL 150
>SB_52979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 37 LLLVALCVGVQSRYLIVSEPVYYIQHYEE 123
+LL+AL + YL+V VY+I Y E
Sbjct: 340 VLLIALLFASYTTYLVVMPTVYFIFGYNE 368
>SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)
Length = 370
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 79 LIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLKSNSTSGAG 207
LI+ PV+ +Q PE + R+D G + ++ SG G
Sbjct: 165 LILLVPVFAVQMVTSPERVLRKPRRKDNQGRVASPHHTESGGG 207
>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2641
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 SFYC-LSLCASAFKADT*LSANLFTIFNTMRSLNY*QALESAGTRTELSRS 181
+FYC L+ A+ +KA T + +N + +F+ S L SAG RS
Sbjct: 1034 TFYCALATKATVYKAKTPIESNTWYLFSVTWSTAKGLVLFSAGKEVYADRS 1084
>SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)
Length = 458
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 204 WSSSTLCWLRQEYSMRYRFLRL 269
W L WL E +R +FL+L
Sbjct: 121 WEDGALSWLEMEKDLRSQFLKL 142
>SB_26340| Best HMM Match : TP2 (HMM E-Value=4.9)
Length = 290
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 146 ESAGTRTELSRS-SPIVPLVLEFKYPLLVTTR 238
E+AG E +R+ SP++PL+ E + LV+++
Sbjct: 45 EAAGNTEETARNESPLLPLISEGSFTSLVSSK 76
>SB_22631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 34 FLLLVALCVGVQSRYLIVSEPVYYIQHYE 120
F++L A +GV Y V+EP+Y HYE
Sbjct: 115 FMMLFAAGIGVGLFYFGVAEPIY---HYE 140
>SB_55240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 100 YYIQHYEEPELLTSSR-VRRDAHGALTLKSNSTS 198
Y+ H + LT+SR +R +A ALTL+ N+T+
Sbjct: 18 YWAGHEMKAAALTASRSLRSEATHALTLQKNTTT 51
>SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)
Length = 812
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 216 YLNSSTRGTIGLERESSVRVPADSR 142
YL++ TRG+I +R+ +V + D R
Sbjct: 34 YLSTETRGSIHQQRQKAVSISRDRR 58
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Frame = +1
Query: 100 YYI--QHYEEPELLTSSRVRRD--AHG 168
YYI H EE E SSRVRRD +HG
Sbjct: 1121 YYILMHHAEEGEQPESSRVRRDCGSHG 1147
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 51 SVRRRSKPIPDCQRTCLLYSTL 116
++R RS P PD TC+ Y+ L
Sbjct: 8 TLRLRSPPRPDAPSTCIKYTLL 29
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 121 PHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSR 20
PH + + K +S G RRR +RQA +RR R
Sbjct: 1623 PHVLRFGKP---KSRKGIRRRRRKRQARRRRRRR 1653
>SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 28 IVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEP 126
IVF +++ C + R L + P Y + YE+P
Sbjct: 216 IVFRIVLNKCEALHVRTLKPAAPAYTLNAYEKP 248
>SB_32536| Best HMM Match : TAFII55_N (HMM E-Value=7.2)
Length = 211
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 263 KEPIAHTIFLS*PAKGT*TPAPEVLLDLS 177
+ P H I + PAK T T AP+ + LS
Sbjct: 57 ERPSVHVILKTSPAKNTRTDAPKEFVKLS 85
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 85 VSEPVYYIQHYEEPELLTSS 144
+S +YYIQ EP L TSS
Sbjct: 32 LSTTLYYIQSISEPPLTTSS 51
>SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)
Length = 910
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 118 EEPELLTSSRVRRDAHGALTLKSNSTSGAGVQVPFAGYDKNIVCAIGS 261
EE +++ S++ + + S S + +Q P G + N VCA S
Sbjct: 273 EENHIVSDSKMEISSETGVCSSSLSEDDSNLQTPEEGNENNGVCANNS 320
>SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)
Length = 282
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 127 ELLTSSRVRRDAHGALTLKSNSTSGAGVQVPFAGYDKN 240
E+LT R RR GAL+++ + G G D N
Sbjct: 18 EILTEKRERRSLSGALSIEDCDSLXKGEDSSQDGIDSN 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,187,512
Number of Sequences: 59808
Number of extensions: 130359
Number of successful extensions: 411
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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