Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H24
         (284 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    28   1.2  
At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1...    27   2.7  
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila...    26   3.5  
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr...    26   4.6  
At1g06360.1 68414.m00672 fatty acid desaturase family protein si...    25   6.1  
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa...    25   8.1  
At5g03880.1 68418.m00362 expressed protein                             25   8.1  

>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
           identical to SP|Q42510; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1451

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +1

Query: 61  GVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLKSNSTSGAGVQVPFAGYDKN 240
           GV S Y IVS+PV       E ++  S  +   A GA +L  +   G G + P + YD +
Sbjct: 249 GVDSDYAIVSKPVEDGNANSEYDVENS--MATFATGAQSLMDDGPVGPGSRKPASPYDLH 306

Query: 241 IV 246
           I+
Sbjct: 307 IM 308


>At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 422

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -2

Query: 160 RPCGL*SLSIVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSRT 17
           R  G  S  ++ +P+  E   Q+  ++  G +RRR +R+  +R++SRT
Sbjct: 204 RSSGDESDDLISSPNFSEMYTQLANKTSPGGDRRRQKRKEKERQASRT 251


>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
           to S-receptor kinase gi|392557|gb|AAA62232; contains
           Pfam domains PF00954: S-locus glycoprotein family,
           PF00069: Protein kinase domain and PF01453: Lectin
           (probable mannose binding)
          Length = 772

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 76  YLIVSEPVYYIQHYEEPELLTSSRVRRDAHGAL 174
           Y+   E VYY    E P +LT  R++ + +GAL
Sbjct: 227 YVFTEEEVYYTYKLENPSVLT--RMQLNPNGAL 257


>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 934

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 252 SAYYILVVTSKGYLNSSTRGTIGLERESSVRVPAD 148
           S Y  ++   + YL+ + R   G E E+SVR P D
Sbjct: 176 SMYGSMLSEDRFYLSVAARINFGAESEASVRYPDD 210


>At1g06360.1 68414.m00672 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 247 ILYSCRNQQRVLELQHQRYYW 185
           I Y C  +  V++L+ Q +YW
Sbjct: 148 IKYKCGGRNNVMDLKQQWFYW 168


>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 691

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 85  QSGIGFERRRTERQAIKRRSSRTCLCTE 2
           Q+   ++RRRTER  + RRS  + L  +
Sbjct: 436 QNSPHYQRRRTERSELARRSLLSSLAAD 463


>At5g03880.1 68418.m00362 expressed protein
          Length = 339

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 206 PAPEVLLDLSVRAPCASLRTLELVNSSGS 120
           P P +L  LS  +  +S+RTL +V +S S
Sbjct: 11  PQPPILRSLSSSSRRSSIRTLVMVKASSS 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,573,465
Number of Sequences: 28952
Number of extensions: 89188
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)