Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H22
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 194 6e-51
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 70 3e-13
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 29 0.64
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 27 1.5
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.5
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 27 2.0
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 27 2.6
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.4
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 26 4.5
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.0
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 6.0
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 194 bits (474), Expect = 6e-51
Identities = 89/135 (65%), Positives = 103/135 (76%)
Frame = +2
Query: 173 RAVNKIPDELLNDPLLNRACEGLPQNYNFEIHKTIWRIRTLKAKRVALQMPEGLTMFATT 352
R +IP+++LND +N A + LPQNYNFEIHKTIW IR KAKRVALQ+PEGL MF
Sbjct: 47 RVATQIPEDILNDKAINEAIKLLPQNYNFEIHKTIWHIRLRKAKRVALQLPEGLLMFGCI 106
Query: 353 LCDIVETFTDADTVIMGDVTYGACCVDDFTAVALGVDLLVHYGHSCLIPIDQTNTIKVLY 532
L DI E F +T++MGDVTYGACC+DDFTA AL D LVHYGHSCLIP+DQT IKVLY
Sbjct: 107 LSDIFEQFCQVETIVMGDVTYGACCIDDFTARALDCDFLVHYGHSCLIPVDQT-PIKVLY 165
Query: 533 IFVDFKIDPAHFVDT 577
+FVD KID H V +
Sbjct: 166 VFVDIKIDLQHVVSS 180
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 69.7 bits (163), Expect = 3e-13
Identities = 33/94 (35%), Positives = 54/94 (57%)
Frame = +2
Query: 257 FEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDD 436
+EI++T+ I++ VALQ P+ + + I+ +A+ I+ D YG+CCVD+
Sbjct: 37 YEINRTVDFIKSGNYNSVALQFPDEHLADSGKVASILTNLVEANVQILADTNYGSCCVDE 96
Query: 437 FTAVALGVDLLVHYGHSCLIPIDQTNTIKVLYIF 538
A + D +VHYG +CL P T+ + VLY+F
Sbjct: 97 VAAEHMSADAIVHYGRACLSP---TSRLPVLYVF 127
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 28.7 bits (61), Expect = 0.64
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 149 RKTFKPNIRAVNKIPDELLNDPLLNRACEGLPQNYNFEIHKTIWRIRTLKAKRVAL 316
+ F+P + V D L P +N+ L + IH+ ++ L+A+++ L
Sbjct: 64 KNAFRPKLEGVISSLDNKLPIPFMNQTYAFLESRLDMSIHRALFASSALQARQLVL 119
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = -1
Query: 286 YPPYSFMYFEVVILW*TFTCSIQQRVVQQFIGNFINSANIWFESFSL 146
YPP+ F Y E V+ W + + ++ + N+++ + + F+ S+
Sbjct: 60 YPPF-FAYMECVLSWIAYFFGFDKAMLDPYNLNYVSPSTVVFQRGSV 105
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 462 STPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHN--VVANIVRPSGI 319
STP T V + P T IT +++ N TIS + V +I PSG+
Sbjct: 81 STPKTTPVSLNAGVPPSNTGANITTNSNNNAQTISSSSQSVGHIDNPSGL 130
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 140 EGQRKTFKPNIRAVNKIPDELLNDPLLNRACEGLPQNYNFEI 265
E + + PN++ K+ DELL D + LP N ++E+
Sbjct: 44 ESKARAAFPNVKVYTKL-DELLADSNIELVVISLPPNVHYEV 84
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 329 GLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDDFTAVALGVDLLVH 475
GLT + T D + ++ +++ D G CC+D+F ++ ++H
Sbjct: 577 GLTAYITRDQDTKQLVLESGALVLSDG--GICCIDEFDKMSDATRSILH 623
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -2
Query: 468 SKSTPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHNVVAN 340
+++ P A A S++QH + P+ S ++N+ T S ++V+N
Sbjct: 255 TRALPLAPA--SNSQHPSLSSQPVSVPSNTINIPTDSLSIVSN 295
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 471 TSKSTPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHNV 349
TS STP T +++ PY ++P+ + + T S +V
Sbjct: 416 TSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSV 456
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -2
Query: 462 STPSATAVKSSTQHAPYVTSPIITVSASVNVST 364
STP AT +++ PY ++P+ + + +++ ST
Sbjct: 547 STPLATTNCTTSTSVPYTSTPVTSSNYTISSST 579
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 25.8 bits (54), Expect = 4.5
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +2
Query: 215 LLNRACEGLPQNYNFEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDADTV 394
+L+ AC + +NY+F+I IR + K EG+ + T +++T + DT
Sbjct: 114 ILSHACRYIKKNYDFDIPNCSNSIRVIDGK------AEGMYGWLATNY-LLKTLEEKDTS 166
Query: 395 IMGDVTYGACCV 430
+G + G V
Sbjct: 167 TVGFLDMGGASV 178
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 79 IILKHCTLNILCISFYIYISY 17
IIL C LNI+C+ +I I Y
Sbjct: 349 IILLGCCLNIVCMVIHITIHY 369
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 222 IEHVKVYHKITTSKYIKLYGGYEL*KQRELLYKCLKV*QCLQ 347
+E K Y K++ +Y L GY K++E+ K +K+ +C++
Sbjct: 724 MELKKRYEKLS-DRYNSLTPGYHKHKRQEIKNKLIKLIECME 764
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,072
Number of Sequences: 5004
Number of extensions: 52959
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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