Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H22
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1210 - 34954006-34955412 126 1e-29
11_03_0017 + 8990852-8990938,8991056-8991243,8991687-8991795,899... 56 3e-08
02_04_0009 - 18865087-18866249,18866357-18866471,18866555-188666... 29 2.0
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 29 2.0
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 29 2.7
06_03_1336 - 29424470-29424897,29425243-29429653 28 4.6
04_04_1435 + 33585508-33586490,33586646-33586664 28 4.6
>02_05_1210 - 34954006-34955412
Length = 468
Score = 126 bits (305), Expect = 1e-29
Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Frame = +2
Query: 116 VVVIRAKPEGQRKTFKPNIRAVNKIPDELLNDPLLNRACEGL-PQNYNFEIHKTIWRIRT 292
+V+ +G ++ P IP +L+DP L A GL P YNFE+ KT RIR+
Sbjct: 12 LVLATGAAQGPKRKPPPKRFVHTPIPPSILSDPTLAAAATGLLPAAYNFELPKTAHRIRS 71
Query: 293 LKAKRVALQMPEGLTMFATTLCDIVETFTDAD----TVIMGDVTYGACCVDDFTAVALGV 460
A+R ALQ+PEGL +F+ L ++ F + D +I+ D TYGACC+ D A AL
Sbjct: 72 SGARRTALQLPEGLLLFSLPLSHLLAPFLEPDPSNDVLILADPTYGACCLADRPAKALAA 131
Query: 461 DLLVHYGHSCLIPIDQTNTIKVLYIFVDFKIDPAHFVD 574
D+LVHYGHSCL+P+ ++ + VLY+FV+ ++D D
Sbjct: 132 DVLVHYGHSCLVPV-TSSLLPVLYVFVEIRVDAQRLAD 168
>11_03_0017 +
8990852-8990938,8991056-8991243,8991687-8991795,
8992448-8992832,8993240-8993309,8993410-8993477,
8995009-8995124,8995211-8995317,8995488-8995627,
8995794-8996044
Length = 506
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = +2
Query: 257 FEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDADTV---IMGDVTYGACC 427
+E+ +T IR RVALQ P+ + A + + V +M D Y +CC
Sbjct: 9 YEVPRTAEFIRARAYTRVALQFPDEMLRDAAAVAQALRRELGGGGVKLFVMADTAYNSCC 68
Query: 428 VDDFTAVALGVDLLVHYGHSCLIPIDQTNTIKVLYIFVDFKID 556
VD+ A + +VHYGH+C+ P T+ + ++F +D
Sbjct: 69 VDEVGASHIDAQCVVHYGHACMSP---TSNLPAFFVFGKTPLD 108
>02_04_0009 -
18865087-18866249,18866357-18866471,18866555-18866607,
18866703-18866963,18867100-18867150,18867255-18867503,
18867634-18867856,18867958-18868071
Length = 742
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -2
Query: 456 PSATAVKSSTQHAPYVTSPIITV---SASVNVSTISHNVVANIVRPSGICKATLFAFRVR 286
P V +S ++ V P + +ASV V T++ ANI GIC T+F+
Sbjct: 395 PRVEVVHTSNKYEGQVYIPEVNFLIGAASVAV-TLAFQTTANIGNAYGICVVTVFSITTH 453
Query: 285 ILHIVLCI 262
++ +V+ +
Sbjct: 454 LMTVVMLL 461
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 329 GLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDDFTAVALGVDLLVH 475
GLT + T + ET ++ +++ D G CC+D+F ++ ++H
Sbjct: 526 GLTAYVTKDPETGETVLESGALVLSDK--GVCCIDEFDKMSDNARSMLH 572
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 152 KTFKPNIRAVNKIPDELLNDPLLNRACEG--LPQNY 253
KTFK N+R V+K+ E LN LN +G LPQ+Y
Sbjct: 316 KTFKVNVRLVSKLCGEDLN-KYLNEDKDGIPLPQDY 350
>06_03_1336 - 29424470-29424897,29425243-29429653
Length = 1612
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 305 RVALQMPEGLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDDFTAVAL 454
R ++ M +T AT + + D +I D+T+G CCV D T + +
Sbjct: 242 RSSIAMLRPVTTSATIEPEFYGRKGEKDRIIK-DITHGDCCVKDLTVIPI 290
>04_04_1435 + 33585508-33586490,33586646-33586664
Length = 333
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 402 PIITVSASVNVSTISHNVVANIVRPSGICKATLFAFRVRILHIVLCIS 259
P++TV A+ VS + N+V G F + +R L IV +S
Sbjct: 219 PVVTVVAAEGVSVACTSNSTNLVESDGELYCVWFRYPIRCLRIVARVS 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,136
Number of Sequences: 37544
Number of extensions: 297286
Number of successful extensions: 640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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