Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H22
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)                        33   0.13 
SB_33437| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065)          30   1.2  
SB_55692| Best HMM Match : HR1 (HMM E-Value=7.3)                       29   2.7  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   4.8  
SB_55931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)                   28   6.3  
SB_16213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_29510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_15248| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)                 27   8.3  

>SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/94 (32%), Positives = 53/94 (56%)
 Frame = +2

Query: 257 FEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDD 436
           +EI +++  I +    +VALQ P+ L   + ++  ++E        I+ D +YG+CCVD+
Sbjct: 52  YEIERSVQVITSSGFNKVALQFPDSLLADSASVARLIEQRASCKAFILADTSYGSCCVDE 111

Query: 437 FTAVALGVDLLVHYGHSCLIPIDQTNTIKVLYIF 538
             A     +L++HYG +CL    QT  + VLY+F
Sbjct: 112 IAAEHADAELIIHYGQACL---SQTKRLPVLYVF 142


>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
          Length = 646

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 468 SKSTPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHNVVANIV 334
           S S   A  +K + +H P +T  II  S S +  T++H+V  +++
Sbjct: 395 SASNAQAVKIKLTKKHVPCITFEIILPSLSAHTRTVTHDVPVSVI 439


>SB_33437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -2

Query: 453 SATAVKSSTQHAPYVTSPIITVSASVNVSTISHNVVANIVRPSGICKATLFAFRVRILHI 274
           S  ++  S +H+P+  S    VS S  V T+SH+     +R  G+  +TLF      LH 
Sbjct: 93  SGHSLSKSVKHSPHCES----VSESSTVHTVSHHYEYTWLRNRGVDSSTLFEGTPLSLHA 148

Query: 273 VLCIS 259
            + IS
Sbjct: 149 DITIS 153


>SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065)
          Length = 202

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 469 KQVNTKCYSCKVIYTACSICDISHNNRVSISKC 371
           KQ  T  Y   V Y++C IC ++ +  VS S+C
Sbjct: 96  KQELTNPYCIGVPYSSCGICGVAGSGNVSTSQC 128


>SB_55692| Best HMM Match : HR1 (HMM E-Value=7.3)
          Length = 233

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 511 SLVNWYKTGMAIMYKQVNTKCYSCKVIYTACSICDISHNNRVSISK 374
           S  NW+K    +       +C+ C +I+ A  IC  +    +SI+K
Sbjct: 7   SHTNWFKVKACLQ----RIRCFRCALIFKAKKICATTGRRNISITK 48


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -1

Query: 451 CYSCKVIYTACSI--CD---ISHNNRVSISKCFYYIT*CSCK 341
           CYSC+V++ +C +  C    + ++ RV+   C   +  CSC+
Sbjct: 136 CYSCRVVFCSCRVACCSCRVVCYSCRVACCSC--RVACCSCR 175


>SB_55931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 484 MAIMYKQVNTKCYSCKVIYTACSI-CDISHNNRVSI 380
           MA  YK++   CY+C  ++T  +  C  S +N +++
Sbjct: 94  MAFAYKELRDVCYNCFALFTTWNFACVFSRSNGLNL 129


>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
          Length = 750

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 187 FINSANIWFESFSLAFGFRSDH-DHTWIVSIIYHRV 83
           F   +  W   F +  G   DH D+TWI  +  H+V
Sbjct: 139 FHRGSRAWDLKFYMPHGLTIDHEDNTWITDVALHQV 174


>SB_16213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 86  TMVDYADNPGVVVIRAKPEGQRKTFKPNIRAVNKIPDELLNDPLLNR 226
           T+  YA  P  + +++      K+  PN R  N +  + LNDP++NR
Sbjct: 5   TLATYAQAPCRLTVKSTHR-YNKSLPPNKRR-NWVTPQYLNDPMINR 49


>SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 474 CTSKSTPSATAVKSST--QHAPYVTSP 400
           CT +STPS  A   ST  Q APY ++P
Sbjct: 204 CTGESTPSQQAPYQSTPSQRAPYQSTP 230


>SB_29510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 549 LKSTNIYKTLIVLVWSIGIRQEWP*CTSKSTPSATAVKSSTQHAP 415
           + ST +YK    LV++  ++Q       ++TP A A++S+   AP
Sbjct: 1   MTSTLVYKLTRTLVYTTALQQPAKVVALETTPCAFALRSTGSRAP 45


>SB_15248| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)
          Length = 325

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 459 TPSATAVKSSTQHAPYVTSPIITVSASV-NVSTISHNVVANIVRPSGICKATLFAFRVRI 283
           TP A    +   H P VT+  +  +ASV +++T+S      I +P    + T+   +++I
Sbjct: 106 TPQALKANNCLIHKPLVTARFVCYAASVFSIATLSVERWYAICQPFAAARKTVQKKKLKI 165

Query: 282 L 280
           L
Sbjct: 166 L 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,886,958
Number of Sequences: 59808
Number of extensions: 397946
Number of successful extensions: 966
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)