Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H22
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 QRKTFKPNIRAVNKIPDELLNDP 214
           +RKT + +I A  +I    LNDP
Sbjct: 874 KRKTLRASIAAQRRIQSNGLNDP 896


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 558 GSILKSTNIYKTLIVLVWSIG 496
           GS+L++T  Y T+ ++  S G
Sbjct: 443 GSVLRATKEYNTVPIIAESYG 463


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 558 GSILKSTNIYKTLIVLVWSIG 496
           GS+L++T  Y T+ ++  S G
Sbjct: 443 GSVLRATKEYNTVPIIAESYG 463


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 558 GSILKSTNIYKTLIVLVWSIG 496
           GS+L++T  Y T+ ++  S G
Sbjct: 443 GSVLRATKEYNTVPIIAESYG 463


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 565 MRWINLKIYKYI*NFDSISLVNWYKTGMAIMYKQVNTKC 449
           M  +++K+ K+I N  + + VN+   G  +    +NT+C
Sbjct: 545 MMALSMKLQKFINNDYNFNEVNFRILGANVNDLIMNTRC 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,256
Number of Sequences: 438
Number of extensions: 4031
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)