Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H20
         (571 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.45 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   1.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = +3

Query: 396 KYHNGRCHWHCQDNASSFNGTLPLRLSKRNPW----HSTICW 509
           K  NGRC   C   A  F+G     L   NPW     ST CW
Sbjct: 496 KRGNGRCDEECNTYACEFDGN-DCSLG-INPWANCTASTRCW 535


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 393 WKYHNGRCHWHCQDNASS 446
           W Y+  R H HC   + S
Sbjct: 84  WVYYESRAHIHCSVKSES 101


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 413 SSIVIFPLCLMFFCFL 366
           S+ +IF + L+F+C L
Sbjct: 217 SAFIIFTIHLLFYCVL 232


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 169 KIYYVDNHSKY*QESMAVTWP 107
           K+++ +   K  ++ MA+ WP
Sbjct: 116 KVWFQNRRMKDKRQRMAIAWP 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,222
Number of Sequences: 336
Number of extensions: 2791
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)