Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H20
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   167   8e-43
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   167   8e-43
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   1.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    27   2.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   3.4  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  167 bits (407), Expect = 8e-43
 Identities = 74/111 (66%), Positives = 99/111 (89%)
 Frame = +1

Query: 202 SPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKN 381
           SPKKVG+DIAKAT DWKGL++TV+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN
Sbjct: 38  SPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN 97

Query: 382 IKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRPP 534
           + H+GN++++++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ P
Sbjct: 98  VAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNP 148


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  167 bits (407), Expect = 8e-43
 Identities = 74/111 (66%), Positives = 99/111 (89%)
 Frame = +1

Query: 202 SPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKN 381
           SPKKVG+DIAKAT DWKGL++TV+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN
Sbjct: 38  SPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN 97

Query: 382 IKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRPP 534
           + H+GN++++++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ P
Sbjct: 98  VAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNP 148


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 130 PANTSSDYLHNKFYHVINSN--FASQSP 207
           P N S+ +  N  YHV NSN   ASQ+P
Sbjct: 562 PKNLSTSWNQNMGYHVTNSNSELASQNP 589


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 5   RVLPGG-GWKEPATQDPMPVSLSRLLR 82
           R+ P G GWK P+  +P  + +S + R
Sbjct: 23  RIAPSGLGWKSPSLAEPFTLPISEIRR 49


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 451 LNEDALSWQCQ*HLPL*YFHCV*CSSAS 368
           L EDA +WQCQ      YF  V CS  S
Sbjct: 652 LMEDAENWQCQHCKAFSYFSQVACSCKS 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,086
Number of Sequences: 5004
Number of extensions: 43964
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)