Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H20
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0416 + 28791512-28792012                                        174   5e-44
04_04_1026 + 30214437-30214937                                        171   4e-43
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   3.4  
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266...    28   6.0  
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050     28   6.0  
04_04_0453 - 25346114-25346214,25346600-25346699,25346901-253469...    27   8.0  

>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  174 bits (423), Expect = 5e-44
 Identities = 80/112 (71%), Positives = 102/112 (91%), Gaps = 1/112 (0%)
 Frame = +1

Query: 202 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 378
           SPKK+G+DIAK T+ DWKGL++TV+L VQNRQA++SVVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38  SPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVK 97

Query: 379 NIKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRPP 534
           NIKH+GNI+++DVI IA++MRPRSMA+ ++G+VKEILGT  SVGCTV+G+ P
Sbjct: 98  NIKHSGNISLDDVIEIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDP 149


>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  171 bits (415), Expect = 4e-43
 Identities = 80/112 (71%), Positives = 101/112 (90%), Gaps = 1/112 (0%)
 Frame = +1

Query: 202 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 378
           SPKK+G+DIAK T+ DWKGL++TV+L VQNRQA++SVVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38  SPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVK 97

Query: 379 NIKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRPP 534
           NIKH+GNI+++DVI IA+IMR RSMA+ ++G+VKEILGT  SVGCTV+G+ P
Sbjct: 98  NIKHSGNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDP 149


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 247 WKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQ 375
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,
            2669578-2669921,2670544-2670667,2671350-2671599,
            2672486-2672571
          Length = 943

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/79 (22%), Positives = 31/79 (39%)
 Frame = +1

Query: 157  HNKFYHVINSNFASQSPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALII 336
            HN +   +N + A+      G   +   S W+     ++ I    QAQ  ++PS +A  +
Sbjct: 863  HNNYCPWVNGHVAAACCINTGSSTSTGLSGWQLTVDALETIQSLAQAQNQIMPSDSAASL 922

Query: 337  RALKEPPRDRKKQKNIKHN 393
                     RK  K   H+
Sbjct: 923  YKDDHVAPSRKLLKRASHS 941


>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
          Length = 709

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 334 IRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPRSMARYLS 468
           +R   +PPRDR+  K +  N N+T    +  A ++ P S  R LS
Sbjct: 64  VRQCSQPPRDRRVTKLVLENLNLT---GVLTATLLAPLSELRVLS 105


>04_04_0453 -
           25346114-25346214,25346600-25346699,25346901-25346962,
           25347053-25347186,25347320-25347408,25347667-25347696
          Length = 171

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 300 LRLSVLHYQLDRDLETLPVTSGFS 229
           L+ S+LHY  +++LE L   +GFS
Sbjct: 129 LKSSILHYLTEKELEELAKEAGFS 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,905,746
Number of Sequences: 37544
Number of extensions: 336349
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)