Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H20
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 1e-49
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 30 1.5
SB_57115| Best HMM Match : HALZ (HMM E-Value=7.6) 29 2.7
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3) 29 2.7
SB_15149| Best HMM Match : HALZ (HMM E-Value=7.6) 29 2.7
SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_3112| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 27 8.2
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 192 bits (469), Expect = 1e-49
Identities = 89/111 (80%), Positives = 102/111 (91%)
Frame = +1
Query: 202 SPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKN 381
SPKKVGDDIAKAT DWKGLKITV L +QNRQA++SVVPSA++LII+ALKEPPRDRKK KN
Sbjct: 38 SPKKVGDDIAKATQDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKN 97
Query: 382 IKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRPP 534
IKHNGNIT++DV +AK+MRPRSMAR+LSG+VKEILGT QSVGCTV+G P
Sbjct: 98 IKHNGNITLDDVTNVAKVMRPRSMARHLSGTVKEILGTCQSVGCTVDGMAP 148
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 522 GQAPHDIIDDINSGAL 569
G APHD+ID INSG +
Sbjct: 145 GMAPHDVIDKINSGEI 160
>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
Length = 302
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 259 KITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKH 390
++ ++ + RQ + +PSA IR +E PR +K N+KH
Sbjct: 97 RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140
>SB_57115| Best HMM Match : HALZ (HMM E-Value=7.6)
Length = 209
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 356 GGSLRALMISAAAEGTTEICACLFCTIN 273
GG L+ L++S G T ACL+C ++
Sbjct: 59 GGDLKFLLLSMGLSGATSDYACLWCIVH 86
>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 356 GGSLRALMISAAAEGTTEICACLFCTIN 273
GG L+ L++S G T ACL+C ++
Sbjct: 459 GGDLKFLLLSMGLSGATSDYACLWCIVH 486
>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
Length = 711
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 356 GGSLRALMISAAAEGTTEICACLFCTIN 273
GG L+ L++S G T ACL+C ++
Sbjct: 459 GGDLKFLLLSMGLSGATSDYACLWCIVH 486
>SB_15149| Best HMM Match : HALZ (HMM E-Value=7.6)
Length = 328
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 356 GGSLRALMISAAAEGTTEICACLFCTIN 273
GG L+ L++S G T ACL+C ++
Sbjct: 59 GGDLKFLLLSMGLSGATSDYACLWCIVH 86
>SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 389 CLMFF-CFLRSRGGSLRALMISAAAEGTTEICACLFCTINWT 267
CL+ F CF RG +L+ ++ C +FC WT
Sbjct: 444 CLLHFTCFHPYRGKTLKTARLTVVQGRGRSCCKPVFCARRWT 485
>SB_3112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 375 EEH*TQWKYHNGRCHWHCQDNASSFNG-TLPLRLSKRNPWHSTI 503
EE +WK GRC W S ++P+ S R P H +
Sbjct: 84 EEEYRRWKLFYGRCSWTPAGLVRSVTSKSIPMSRSSRYPCHKHV 127
>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 904
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 368 LRSRGGSLRALMISAAAEGTTEICACLFCTINWTVILRP 252
+R +G SL++L+ + IC CL C I+ V+ P
Sbjct: 175 IRYKGKSLKSLIARGLIKVHPPICDCLGCRISSPVVASP 213
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 358 RDRKKQKNIKHNGNITMEDVIGIAKIMRPRSMARYLSG 471
R R K+K+IK N + V + + PR++ R + G
Sbjct: 823 RSRSKEKDIKTNPTVQEAKVSAVTGVFVPRTITRTVQG 860
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 418 IGIAKIMRPRSMARYLSGS-VKEILGTAQSVGCTVEGRPP 534
+G K+++ R G V+ + GT S+ C VEG PP
Sbjct: 128 VGTHKLLKSRDPVIVTIGDKVETLTGTEVSIICPVEGLPP 167
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,579,422
Number of Sequences: 59808
Number of extensions: 360475
Number of successful extensions: 871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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