Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H20
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 413 SSIVIFPLCLMFFCFLRSR 357
           SS VIF +  + F FLR+R
Sbjct: 14  SSCVIFGVLFVLFSFLRTR 32


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 413 SSIVIFPLCLMFFCFLRSR 357
           SS VIF +  + F FLR+R
Sbjct: 14  SSCVIFGVLFVLFSFLRTR 32


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 281 TINWTVILRPFQSLVALAMSSPTFFG 204
           +I   VIL  F  + AL++S P  FG
Sbjct: 11  SIRHAVILASFVWIYALSLSLPPLFG 36


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 361 DRKKQKNIKHNGNITMEDVIGIAKIMRP 444
           +++ ++  +  G + ME+ +  AK MRP
Sbjct: 182 EQEAKRRFEKYGQLFMEETLKAAKRMRP 209


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +3

Query: 393 WKYHNGRCHWHCQDNASSFNGTLPLRLSKRNPWHSTICWM 512
           W +   R H   Q     F   LP  L  R P  + + WM
Sbjct: 320 WNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWM 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,796
Number of Sequences: 438
Number of extensions: 3114
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)