Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H20
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   173   7e-44
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   169   1e-42
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           169   1e-42
At5g36080.1 68418.m04348 hypothetical protein                          28   3.8  
At5g49220.1 68418.m06093 expressed protein                             27   6.7  
At2g31890.1 68415.m03896 expressed protein                             27   6.7  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  173 bits (421), Expect = 7e-44
 Identities = 81/112 (72%), Positives = 101/112 (90%), Gaps = 1/112 (0%)
 Frame = +1

Query: 202 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 378
           +PKK+G+DIAK T+ +WKGL++TV+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38  APKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVK 97

Query: 379 NIKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRPP 534
           NIKHNGNI+ +DVI IAKIMRPRS+A+ LSG+VKEILGT  SVGCTV+G+ P
Sbjct: 98  NIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDP 149


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  169 bits (410), Expect = 1e-42
 Identities = 78/112 (69%), Positives = 100/112 (89%), Gaps = 1/112 (0%)
 Frame = +1

Query: 202 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 378
           +PKK+G+DIAK T+ +WKGL++TV+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38  APKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVK 97

Query: 379 NIKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRPP 534
           NIKHNGNI+ +DV  IA+IMRPRS+A+ LSG+V+EILGT  SVGCTV+G+ P
Sbjct: 98  NIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDP 149


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  169 bits (410), Expect = 1e-42
 Identities = 78/112 (69%), Positives = 100/112 (89%), Gaps = 1/112 (0%)
 Frame = +1

Query: 202 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 378
           +PKK+G+DIAK T+ +WKGL++TV+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38  APKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVK 97

Query: 379 NIKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRPP 534
           NIKHNGNI+ +DV  IA+IMRPRS+A+ LSG+V+EILGT  SVGCTV+G+ P
Sbjct: 98  NIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDP 149


>At5g36080.1 68418.m04348 hypothetical protein 
          Length = 153

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 130 PANTSSDYLHNKFYHVINSNFASQSPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQI 303
           P +   DY+  KF  V N N      K   D++ K+   WK L     + V  + + I
Sbjct: 9   PTSIGRDYMVEKFNQVFNMNRTYVFFKNKHDELKKSYKGWKFLTHKTGISVDPKTSMI 66


>At5g49220.1 68418.m06093 expressed protein
          Length = 409

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 5   RVLPGGGWKEPATQDPMPVSLSRLLRMLNK-ESRTRPCDCHAFLLI 139
           RVL  G   +   +   PV  +RL  M ++ E +TR  DCH + ++
Sbjct: 101 RVLSDGSNLDRFLEHTTPVVPARLFPMRSRWELKTRESDCHTYFVL 146


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 349 EPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPRSMA 456
           +PP+ RKKQKN K      +ED  G+   +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,375
Number of Sequences: 28952
Number of extensions: 246902
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)