Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H16
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_59317| Best HMM Match : APT (HMM E-Value=7.8) 29 4.1
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5) 29 4.1
SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_20934| Best HMM Match : PSI_8 (HMM E-Value=4.8) 28 5.4
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1) 28 7.1
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8) 28 7.1
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06) 28 7.1
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKA-VEEF 248
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 401 KDADIAPVPKQKPVLDINKHLRPISLTPVLSKLAEDYIVEQHLKPAVLKKVDVNQF 456
>SB_59317| Best HMM Match : APT (HMM E-Value=7.8)
Length = 229
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKA-VEEF 248
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 35 KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 90
>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
Length = 279
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKA-VEEF 248
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 108 KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 163
>SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 DVDQVNVDDEYYKIGKDYDVEANIDD 218
D D N+DD+Y G D D + N+DD
Sbjct: 186 DNDDNNLDDDYGTYGDDNDDDDNLDD 211
>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1460
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 117 KKVLSLFQDVDQVNVDDEYYKIGKDY-DVEAN-IDDYTNKKAVEEFLKLYRI 266
++ +SLF+DVD+ D+ Y KI Y D+ + ID Y + F KL ++
Sbjct: 93 ERCISLFKDVDKYKHDERYLKIWIQYADLCTDPIDVYDYMHSQSMFSKLAKL 144
>SB_20934| Best HMM Match : PSI_8 (HMM E-Value=4.8)
Length = 252
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 219 SHRCWLQRHSPFQFCSIHHQR*LGLHLGKGIKPFSGAPQTLRRHLLS*SDTFSVT 55
SHR L R+SPF S+ + L L GI+ P R+ L+ TF+++
Sbjct: 131 SHRYSLARYSPFTLPSVFARPVFTLRLLIGIRSPGSHPSPSHRYSLARYSTFALS 185
>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKA-VEEF 248
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 681 KDADIAPVPKQKPVLDVNKHLWPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 736
>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
Length = 602
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 84 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKK 233
KD D V +QK +L + + + +++ K+ +DY VE ++ KK
Sbjct: 347 KDADIAPVPKQKPILDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKK 396
>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
Length = 62
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 47 QCGVTENVSLQDKRCRRSVCG 109
+C + +NV D+ CRRS CG
Sbjct: 29 KCHMEKNVIFDDRACRRSRCG 49
>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
Length = 773
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKA-VEEF 248
KD D V +QK VL + + + +++ K+ +DY VE ++ KK V +F
Sbjct: 392 KDADIAPVPKQKPVLDVNKHLWPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 447
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 21 AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGK 188
+G+I L + + V+ Y+FK K D +F +L + +DQ N ++ G+
Sbjct: 1370 SGIITLSREAPVNVWEYNFKVKATDGIFTATTDVLLDI---IDQNNHKPQFTNCGE 1422
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,840,894
Number of Sequences: 59808
Number of extensions: 392629
Number of successful extensions: 1724
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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