Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H13
         (366 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.87 
SB_59025| Best HMM Match : Antimicrobial_5 (HMM E-Value=5.1)           27   6.2  
SB_52979| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   8.1  
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   26   8.1  

>SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 0.87
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 233 LPAKGTLTPA-PEVPSELSVRAPCASLRTLELVNSSGSS 120
           L AKG L+   P    E  +RAPC+SL   E   SSG S
Sbjct: 13  LEAKGRLSERRPSAKCESILRAPCSSLEDKESDESSGLS 51


>SB_59025| Best HMM Match : Antimicrobial_5 (HMM E-Value=5.1)
          Length = 216

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 145 SLSIVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSRTCL 14
           S ++   P ++++S+  R Q  IG++  R  +  I+ R  + CL
Sbjct: 107 SYALPTTPATLKHSEAKRRQGKIGYQASRDAKTGIRDRQLQECL 150


>SB_52979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  LLLVALCVGVQSRYLIVSEPVYYIQHYEE 126
           +LL+AL     + YL+V   VY+I  Y E
Sbjct: 340 VLLIALLFASYTTYLVVMPTVYFIFGYNE 368


>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 35   SFYC-LSLCASAFKADT*LSANLFTIFNTMRSLNY*QALESAGTRTELSRS 184
            +FYC L+  A+ +KA T + +N + +F+   S      L SAG      RS
Sbjct: 1034 TFYCALATKATVYKAKTPIESNTWYLFSVTWSTAKGLVLFSAGKEVYADRS 1084


>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 775

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 SGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLGAATAGV 312
           +G  VK+P  G DK + + +  L L  R   G  TA V
Sbjct: 325 AGVHVKLPNLGKDKRLDTILDKLRLQKRGTGGVDTAAV 362


>SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 362 MCVSVRLTPWPFTLSSATPAVAAPSFC 282
           MCV +  TP P + +S+ P  + PS C
Sbjct: 142 MCVPLPETPNPTSKTSSPPTPSTPSVC 168


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 54  SVRRRSKPIPDCQRTCLLYSTL*GA*TIDKL*SPQGRARSSHAQLRW 194
           S+R R K    C R+ +LY+   G     K        RS HA LRW
Sbjct: 559 SLRTRGKVYSSCVRSAMLYA---GECWAPKSSDLARLQRSEHAMLRW 602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,982,361
Number of Sequences: 59808
Number of extensions: 196116
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)