Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H13
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    29   0.95 
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo...    29   1.3  
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con...    27   2.9  
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi...    27   3.8  
At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1...    27   5.0  
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila...    26   6.7  

>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
           identical to SP|Q42510; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1451

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +1

Query: 64  GVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKN 243
           GV S Y IVS+PV       E ++  S  +   A GA +L  DG  G G + P +  D +
Sbjct: 249 GVDSDYAIVSKPVEDGNANSEYDVENS--MATFATGAQSLMDDGPVGPGSRKPASPYDLH 306

Query: 244 IVS 252
           I++
Sbjct: 307 IMT 309


>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
           identical to DegP protease precursor GB:AF028842 from
           [Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
           7094-7098 (1998))
          Length = 439

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = -2

Query: 362 MCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSEL 183
           +C SV L+   F+L +A+PAV + S   +V + + +      ++      TP+    + L
Sbjct: 83  LCTSVALS---FSLFAASPAVESAS-AFVVSTPKKLQTDELATVRLFQENTPSVVYITNL 138

Query: 182 SVRAPCASLRTLELVNSSGS 123
           +VR    +L  LE+   SGS
Sbjct: 139 AVRQDAFTLDVLEVPQGSGS 158


>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
           contains F-box domain Pfam:PF00646; contains TIGRFAM
           TIGR01640: F-box protein interaction domain; similar to
           S locus F-box (SLF)-S2-like protein (GI:13161528)
           [Antirrhinum hispanicum]
          Length = 392

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 362 MCVSVRLTPWPFTLSSATPAVA 297
           M +S     WPFTLS  TPA+A
Sbjct: 144 MKLSPEFMQWPFTLSYLTPAMA 165


>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 593

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 DLTNRQKLGAATAGVALDNVNGHGVSLT 351
           +L N  + G  TAGV   N NG+GV  T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207


>At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 422

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 163 RPCGL*SLSIVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSRT 20
           R  G  S  ++ +P+  E   Q+  ++  G +RRR +R+  +R++SRT
Sbjct: 204 RSSGDESDDLISSPNFSEMYTQLANKTSPGGDRRRQKRKEKERQASRT 251


>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
           to S-receptor kinase gi|392557|gb|AAA62232; contains
           Pfam domains PF00954: S-locus glycoprotein family,
           PF00069: Protein kinase domain and PF01453: Lectin
           (probable mannose binding)
          Length = 772

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 79  YLIVSEPVYYIQHYEEPELLTSSRVRRDAHGAL 177
           Y+   E VYY    E P +LT  R++ + +GAL
Sbjct: 227 YVFTEEEVYYTYKLENPSVLT--RMQLNPNGAL 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,398,829
Number of Sequences: 28952
Number of extensions: 130415
Number of successful extensions: 400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)