Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H12
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 159 2e-40
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 158 3e-40
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.22
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.38
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.51
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.5
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 2.0
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 2.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 3.6
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 4.7
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 4.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.2
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 6.2
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 6.2
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 6.2
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 8.2
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 8.2
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 8.2
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 24 8.2
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 24 8.2
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 24 8.2
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 24 8.2
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 159 bits (385), Expect = 2e-40
Identities = 75/108 (69%), Positives = 89/108 (82%)
Frame = +2
Query: 2 KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQV 181
KT K+AS+++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R+ V
Sbjct: 7 KTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 325
RGIS KLQEEERER+D YVPEVS LE+D I VD DTKDMLK L + +I
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 158 bits (384), Expect = 3e-40
Identities = 78/126 (61%), Positives = 96/126 (76%)
Frame = +2
Query: 2 KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQV 181
KT K+AS+++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R+ V
Sbjct: 7 KTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQG 361
RGIS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L + I +++ PA Q
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQE 125
Query: 362 GYGGRR 379
+ R+
Sbjct: 126 RFRRRQ 131
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.22
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 199 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 65
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 28.7 bits (61), Expect = 0.38
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Frame = +2
Query: 206 EEERERRDNYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQL 340
EEE+ER NY+ P +S +E +++ +++ + M+D SN GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.51
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -3
Query: 184 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 35
SH+ + +T+ + G P V KR+ D N L + IE +KS P VV +
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 173 SQVRGISIKLQEEERERRDNYVPEV 247
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 158 RRLIHSQVRGISIKLQEEERERRDNYVPEVS 250
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 2.7
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -3
Query: 397 YNISLITSATVASLCSRLR*LQTINVTEVKH-LQHILGVRIDFNDILF*SRYFWDIIVTP 221
+N ++ + RL T +V+H L+ +L + I+ + +YF I TP
Sbjct: 439 FNFNVALPTCLVKERDRLTFDTTYKYIKVRHRLKALLVLSIENTENPEKRKYFEINIETP 498
Query: 220 FTLLFLKLNRDSSHLGVYETSHQ 152
+L + +DS+ L YE+S Q
Sbjct: 499 VRILSCRCVKDSTLLPPYESSSQ 521
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 3.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 163 TSHQMGGEPSNFVAKRLSRNDSN 95
TS MGG PS F LSRN N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 263 PVLEQILLGHNCHAF 219
P+LEQ+L G+NC F
Sbjct: 142 PMLEQVLNGYNCTIF 156
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 4.7
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +2
Query: 167 IHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQ 346
IH+Q + +L EE + P +S + VDS + + DF + L L+
Sbjct: 463 IHAQPNAVYCRLMEEVGMTSKSISPSLSGISAPSASVDSSASRLAR--DFGS---LSLSS 517
Query: 347 PATQGGYGG 373
+ G GG
Sbjct: 518 NSLLGSLGG 526
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 197 KLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 328
K E+++E DNY ALE ++ +++ ++LK DF++ N
Sbjct: 845 KFIEKDQESIDNYEQNREALESEVATAEAEL-ELLKE-DFASEN 886
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 229 VTPFTLLFLKLNRDSSHLGVYETSHQMGGEP 137
VTP TL FLK N + S L + + + EP
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 6.2
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 119 LRNKIAGF----TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 286
+R +IA F H ++R S+ ++ + E +R Y+P +S Q+ +EV ++
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNE 431
Query: 287 TKDMLKMLDFSNI 325
K L S++
Sbjct: 432 RYKRKKGLKDSDV 444
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 48 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 137
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 8.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 128 KIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 238
KIA FT ++ I G+S+KLQE+E +R + V
Sbjct: 352 KIASFTDIMVCLCIG----GLSLKLQEQELRKRPDIV 384
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 87 VRKLLSFLLSLFATKLLGSPPI**DVSYTPRCEESLLSFKK 209
VR LL FL+ + ++G+P VSY P + + F+K
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRK 199
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 92 EIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 184
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 173 SQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPA 352
SQ+R +++ ++ + ++ D YV + I + +S + ++LD+ NG ++ A
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYYTHNGFRVIACA 818
Query: 353 TQ 358
++
Sbjct: 819 SK 820
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 164 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 328
L+H Q+R + KL E+R+ + +E + + + + L+FSN N
Sbjct: 885 LLHDQIRITNAKL-----EKREKLINASKYIEDTLRSEIQEAAEKVSNLEFSNFN 934
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 143 TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKD 295
+ HLM ++ + + QEE R+RR ++ E E++ +D D +
Sbjct: 99 SAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDE 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 191 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTK 292
SI Q ++ D V + S EQD EVD+D K
Sbjct: 18 SIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYK 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,773
Number of Sequences: 5004
Number of extensions: 31303
Number of successful extensions: 121
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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