Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H12
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.50 
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           28   3.6  
SB_54268| Best HMM Match : Vicilin_N (HMM E-Value=0.077)               28   3.6  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       27   6.2  
SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)                 27   8.2  

>SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 11  KKASKIIIEKYYTRLTLDFDTNKRI--CEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 184
           K  S II   + T+L       K I  C E   + ++P+  ++   T H+M R  H  +R
Sbjct: 43  KNPSIIITTNFRTKLATTLPPKKNIDMCPEFDAVTSQPVTAEVPRQTNHVMTRSQHRILR 102

Query: 185 G 187
           G
Sbjct: 103 G 103


>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 238 DIIVTPFTLLFLKLNRDSSHLGVYETSHQM 149
           D++V    LL L+L+ D+++  + +T HQM
Sbjct: 133 DVVVPALALLLLQLDGDATYSTLLDTLHQM 162


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 89  EEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 238
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL 505


>SB_54268| Best HMM Match : Vicilin_N (HMM E-Value=0.077)
          Length = 371

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +2

Query: 158 RRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLD 313
           + L+  +++    +LQE ERE +   +   S+LE+  +++DSD +  +  L+
Sbjct: 289 KELLEQEMQHKEQRLQEWEREFQQKELEFSSSLERLRVDMDSDYRQQMGQLE 340


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 41  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 130
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 2    KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTT 148
            + +++ S+ I+ K Y     D DT K I EE+  +P +P   +   F+T
Sbjct: 1623 EVLQQTSESILVKLY-----DADTKKAIPEEVVAVPQEPTCFRRVAFST 1666


>SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)
          Length = 536

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 200 LQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLK 304
           L  ++RE ++   P+     Q ++E D+D  D LK
Sbjct: 94  LMRQQREEQERLGPDSGLANQVLLEEDADKLDQLK 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,683,864
Number of Sequences: 59808
Number of extensions: 219441
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)