Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H12
(417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 152 9e-38
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 31 0.34
AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical ... 30 0.78
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 29 1.0
U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical pr... 29 1.8
U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 27 5.5
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 27 5.5
Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 26 9.5
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 26 9.5
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 152 bits (369), Expect = 9e-38
Identities = 71/109 (65%), Positives = 89/109 (81%), Gaps = 3/109 (2%)
Frame = +2
Query: 2 KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQV 181
KT+KKAS+++IEKYYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR+ V
Sbjct: 7 KTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTKDMLKMLDFS 319
RGISIKLQEEERERRDNY+PE+S ++ I+VD+DT DMLK F+
Sbjct: 67 RGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 31.1 bits (67), Expect = 0.34
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +2
Query: 155 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 331
+R L +V ++ ++ EE+ R +++ QDI + D+ ++ML+ + +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272
>AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical
protein C10E2.2 protein.
Length = 501
Score = 29.9 bits (64), Expect = 0.78
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 137 GFTTHLMRRLIHSQVRGISIKLQEEERE 220
GFT L RLI +++R + ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 152 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 262
++ R ++SQ+ +SI L+ E +ER+D+Y + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218
>U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical
protein C56G3.1a protein.
Length = 490
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 133 NFVAKRLSRNDSNFLTYPFIGI 68
N+ + +S N SN+LTYPF G+
Sbjct: 8 NYCDRGISPNASNYLTYPFDGL 29
>U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical
protein C56G3.1b protein.
Length = 510
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 133 NFVAKRLSRNDSNFLTYPFIGI 68
N+ + +S N SN+LTYPF G+
Sbjct: 28 NYCDRGISPNASNYLTYPFDGL 49
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 110 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 226
T L NK AG L R+ + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 110 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 226
T L NK AG L R+ + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical
protein W04G5.4 protein.
Length = 490
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 235 IIVTPFTLLFLKLNRDSSHLGVYET 161
II TP T ++ RDS+ G Y T
Sbjct: 282 IIFTPLTNAIFRIRRDSNEAGPYST 306
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 26.2 bits (55), Expect = 9.5
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Frame = +2
Query: 152 LMRRLIHSQVRGISIKLQEEERERRDNYV-----PEVSALEQ----DIIEVDS--DTKDM 298
++R L ++ ISIK+ E+++++ N+V E+ L+Q + IEV+ DT D+
Sbjct: 1656 VLRHLDSRLLKTISIKIVEDDQDKPCNWVLPLEINEICELDQWKFAENIEVEHLIDTDDV 1715
Query: 299 LKMLDFSNINGLQLTQPATQG 361
FS N L+LT+ +G
Sbjct: 1716 RHFGHFSEAN-LKLTRLTMEG 1735
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 26.2 bits (55), Expect = 9.5
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Frame = +2
Query: 152 LMRRLIHSQVRGISIKLQEEERERRDNYV-----PEVSALEQ----DIIEVDS--DTKDM 298
++R L ++ ISIK+ E+++++ N+V E+ L+Q + IEV+ DT D+
Sbjct: 1656 VLRHLDSRLLKTISIKIVEDDQDKPCNWVLPLEINEICELDQWKFAENIEVEHLIDTDDV 1715
Query: 299 LKMLDFSNINGLQLTQPATQG 361
FS N L+LT+ +G
Sbjct: 1716 RHFGHFSEAN-LKLTRLTMEG 1735
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 171 TPRCEESLLSFKKRSVKGVTIMSQKYLL*N 260
T +CEE L+ F ++ +K +++KY L N
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLEN 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,454
Number of Sequences: 27780
Number of extensions: 170920
Number of successful extensions: 538
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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