Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H12
(417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 151 2e-37
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 149 1e-36
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 149 1e-36
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 147 3e-36
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 146 5e-36
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 32 0.18
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 32 0.18
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 29 1.7
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 29 1.7
At4g24450.1 68417.m03505 starch excess protein-related similar t... 28 2.2
At3g53030.1 68416.m05845 protein kinase family protein contains ... 27 5.1
At3g02810.1 68416.m00273 protein kinase family protein contains ... 27 5.1
At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containi... 27 5.1
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi... 26 8.9
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 151 bits (365), Expect = 2e-37
Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 4/129 (3%)
Frame = +2
Query: 2 KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQV 181
KT+KK+S+ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+ V
Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP---- 349
RGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L S+ +G+ +P
Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAM 126
Query: 350 ATQGGYGGR 376
A +GGR
Sbjct: 127 APIAAFGGR 135
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 149 bits (360), Expect = 1e-36
Identities = 73/130 (56%), Positives = 98/130 (75%), Gaps = 4/130 (3%)
Frame = +2
Query: 2 KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQV 181
KT+KK+S+ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+ V
Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP---- 349
RGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L S+ G+ +P
Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAM 126
Query: 350 ATQGGYGGRR 379
A +GG R
Sbjct: 127 APIAAFGGGR 136
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 149 bits (360), Expect = 1e-36
Identities = 73/130 (56%), Positives = 98/130 (75%), Gaps = 4/130 (3%)
Frame = +2
Query: 2 KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQV 181
KT+KK+S+ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+ V
Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP---- 349
RGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L S+ G+ +P
Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAM 126
Query: 350 ATQGGYGGRR 379
A +GG R
Sbjct: 127 APIAAFGGGR 136
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 147 bits (356), Expect = 3e-36
Identities = 69/116 (59%), Positives = 92/116 (79%)
Frame = +2
Query: 2 KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQV 181
KT+KK+S+ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+ V
Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP 349
RGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L S+ G+ P
Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 146 bits (354), Expect = 5e-36
Identities = 73/127 (57%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Frame = +2
Query: 2 KTIKKASKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQV 181
KT+KK+S+ +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+ V
Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQL--TQPAT 355
RGIS+KLQEEERERR ++VP+ SA++ D ++VD +T +ML L S+I G+ TQ A
Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAM 126
Query: 356 QGGYGGR 376
GR
Sbjct: 127 APAVFGR 133
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 31.9 bits (69), Expect = 0.18
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 348 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADTS 241
GC R +K+ +F+ LVS++ S+I+C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 31.9 bits (69), Expect = 0.18
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 348 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADTS 241
GC R +K+ +F+ LVS++ S+I+C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.7 bits (61), Expect = 1.7
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +2
Query: 53 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR-GISIKLQEEERERRD 229
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR- 737
Query: 230 NYVPEVSALEQDI-IEVDSDTKDMLKMLD 313
+S L+ + EVD ++++ M D
Sbjct: 738 -----LSDLQSRVREEVDRQQQEIMSMPD 761
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.7 bits (61), Expect = 1.7
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +2
Query: 53 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR-GISIKLQEEERERRD 229
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR- 737
Query: 230 NYVPEVSALEQDI-IEVDSDTKDMLKMLD 313
+S L+ + EVD ++++ M D
Sbjct: 738 -----LSDLQSRVREEVDRQQQEIMSMPD 761
>At4g24450.1 68417.m03505 starch excess protein-related similar to
SEX1 [Arabidopsis thaliana] GI:12044358
Length = 1284
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 145 GEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVF 38
G +F+ K+ + ++YP I + SKPS++F
Sbjct: 1162 GRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIF 1197
>At3g53030.1 68416.m05845 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 529
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 182 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD-TKDMLKMLDFSNING 331
R +++K+Q+ + + + E++ L+Q I E D+D TK ++K+LD +G
Sbjct: 66 RYVALKVQKSAQHYTEAAMDEITILQQ-IAEGDTDDTKCVVKLLDHFKHSG 115
>At3g02810.1 68416.m00273 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 558
Score = 27.1 bits (57), Expect = 5.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 63 TSIPIKGYVRKLLSFLLSLFATKLLGSPP---I**DVSYTPRCEESLLSFKKRSV 218
T++PI + K +S LS + L+ PP D S T EES L +K SV
Sbjct: 353 TTVPILSFKDKSMSIALSRHDSNLVSPPPELATEDDKSSTSSGEESSLESEKESV 407
>At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 764
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 33 SKNTTLGLLLTSIPIKGYVRKLLSFLLSL 119
+ + T +L+ S+ + GY+RK SF+ SL
Sbjct: 633 ASSATYNILIDSLCVYGYIRKADSFIYSL 661
>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 632
Score = 26.2 bits (55), Expect = 8.9
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +2
Query: 104 IPTKPLRNKI----AGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDII 271
I T + NK+ AG H + I++ +R IS ER + YVP + + QD+
Sbjct: 500 ISTIEIENKVHEFRAGDREHSKSKEIYTMLRKIS------ERIKSHGYVPNTNTVLQDLE 553
Query: 272 EVDSDTKDMLKMLDFSNINGLQLTQPAT 355
E + + + + GL T+P +
Sbjct: 554 ETEKEQSLQVHSERLAIAYGLISTKPGS 581
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,417
Number of Sequences: 28952
Number of extensions: 157833
Number of successful extensions: 513
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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