Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H11
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35630.1 68417.m05060 phosphoserine aminotransferase, chlorop...   124   4e-29
At2g17630.1 68415.m02039 phosphoserine aminotransferase, putativ...   116   1e-26
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea...    27   8.3  
At2g46890.1 68415.m05856 expressed protein                             27   8.3  

>At4g35630.1 68417.m05060 phosphoserine aminotransferase,
           chloroplast (PSAT) identical to Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           (SP:Q96255)[Arabidopsis thaliana]; contains TIGRFAM
           TIGR01364: phosphoserine aminotransferase; contains Pfam
           PF00266: aminotransferase, class V
          Length = 430

 Score =  124 bits (299), Expect = 4e-29
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 1/163 (0%)
 Frame = +1

Query: 58  NMSKVYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRR 237
           +  +V+NF AGPA LPE V    +++L N+  SG+S++E SHR   ++++  + ++ +R+
Sbjct: 69  SQERVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQ 128

Query: 238 LLDVPSNYKIXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNMV 417
           LL++P  Y +             +PLNL     T D+VVTG+W          Y K N++
Sbjct: 129 LLEIPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVI 188

Query: 418 LPA-TDRHVDIPDQSTWNLDPNASYVHICANETIHGVEFDFIP 543
               ++++  +P        P+A Y+HICANETIHGVEF   P
Sbjct: 189 WSGKSEKYTKVPSFEELEQTPDAKYLHICANETIHGVEFKDYP 231


>At2g17630.1 68415.m02039 phosphoserine aminotransferase, putative
           similar to Phosphoserine aminotransferase, chloroplast
           precursor (PSAT) (SP:Q96255) [Arabidopsis thaliana];
           contains TIGRFAM TIGR01364: phosphoserine
           aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 422

 Score =  116 bits (278), Expect = 1e-26
 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
 Frame = +1

Query: 67  KVYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLD 246
           +V NF AGPA LPE V    +S+L N+  SG+S++E SHR   ++++  + ++ +R+LL+
Sbjct: 62  RVINFAAGPAALPENVLLKAQSDLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 121

Query: 247 VPSNYKIXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNMVLPA 426
           +PS Y +             +PLNL     + DY+VTG+W          Y    ++   
Sbjct: 122 IPSEYSVLFLQGGATTQFAALPLNLCKSDDSVDYIVTGSWGDKAFKEAKKYCNPKVIWSG 181

Query: 427 -TDRHVDIPDQSTWNLDPNASYVHICANETIHGVEFDFIP 543
            ++++  +P         +A Y+HICANETIHGVEF   P
Sbjct: 182 KSEKYTKVPTFDGLEQSSDAKYLHICANETIHGVEFKDYP 221


>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
           family protein similar to St12p protein (GI:166878)
           {Arabidopsis thaliana}; contains Pfam profile: PF00400
           WD domain, G-beta repeat
          Length = 398

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 381 EGSEKIWKSEYGFTSD*SSCRYTGSVNVEL 470
           +GS +IWK+E GF    S+   +G  N+EL
Sbjct: 185 DGSARIWKAEDGFPL--STLERSGDENIEL 212


>At2g46890.1 68415.m05856 expressed protein
          Length = 322

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 285 WSWSICCSTS*FNLQNWHS*LRSDW 359
           W WSI  + + F  +NW    R DW
Sbjct: 113 WIWSIRLTHNYFRRENWEWGAREDW 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,910,174
Number of Sequences: 28952
Number of extensions: 210527
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)