Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H10
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   1.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.8  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 236 ASPCPSKEVTVLFPTPPFPESTS 168
           A+P P+  +T L+P+P    STS
Sbjct: 311 ATPTPTSVMTELYPSPVPGHSTS 333


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 338 ELCTCSPRTPSTRG 297
           EL TC+PR P   G
Sbjct: 97  ELATCTPREPGVAG 110



 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 370 PLHIQETSPSQSYVLAPRGHRVHGAGSDHIYLHP 269
           P H    +P+ ++V+      V     D IY HP
Sbjct: 51  PYHANHVNPTANHVMGGAVPDVGKRDKDAIYGHP 84


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 683 STTPST-GTDTFSQNCISLRTSSSATSCGVVTTTA 582
           S+TPS+  T   S +  +  + S  TSC  V TTA
Sbjct: 78  SSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTA 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,873
Number of Sequences: 336
Number of extensions: 4559
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)