Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H10
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 328 5e-91
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 218 6e-58
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 30 0.37
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 29 0.86
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 28 1.1
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 28 1.5
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 27 2.6
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 27 3.5
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 3.5
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 27 3.5
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 26 4.6
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 26 4.6
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 4.6
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 26 4.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.6
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 4.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.0
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.0
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 8.0
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 328 bits (806), Expect = 5e-91
Identities = 147/234 (62%), Positives = 181/234 (77%)
Frame = +1
Query: 4 NAPQHCPGTQSEDAGKASACAGCPNQNLCASGEASRPDPAIEIIKNRLSNVKHKILVLSG 183
+AP+HCPG SE+AG ASAC GCPNQ +CAS DP + ++ RL +KHKILVLSG
Sbjct: 10 DAPEHCPGPSSENAGTASACEGCPNQQICASAPRGE-DPDLPLVVERLKEIKHKILVLSG 68
Query: 184 KGGVGKSTVTSLLGHGLAARTPYVNVGILDADICGPSQPRVLGVRGEQVHNSGSGWSPVY 363
KGGVGKST +S L GL+ +G++D DICGPS PR++GV E+ H S GWSP+Y
Sbjct: 69 KGGVGKSTFSSQLAWGLSLEEDK-QIGLMDVDICGPSIPRIMGVEKEEAHQSSKGWSPIY 127
Query: 364 VTENLSLMSIGFLLGSADDAVIWRGPKKNGMIKQFLSEVDWGELDYLLIDTPPGTSDEHL 543
V NL++MSIGFLL S D +VIWRGPKKNG+IKQF+ +V+W LDYL++DTPPGTSDEHL
Sbjct: 128 VCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDYLIVDTPPGTSDEHL 187
Query: 544 SSVQYLSSAGLTGAVVVTTPQEVALLDVRKEIQFCEKVSVPVLGVVENMSLFIC 705
S VQ+ ++G+ GAVVVTTPQEVAL DVRKEI FC K S+P+LG+VENMS F+C
Sbjct: 188 SLVQFFKNSGIDGAVVVTTPQEVALQDVRKEIDFCRKASIPILGLVENMSGFVC 241
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 218 bits (533), Expect = 6e-58
Identities = 111/201 (55%), Positives = 142/201 (70%), Gaps = 14/201 (6%)
Frame = +1
Query: 145 LSNVKHKILVLSGKGGVGKSTVTSLLGHGLAARTPY---VNVGILDADICGPSQPRVLGV 315
+ V+H ILVLSGKGGVGKS+VT+ L L Y + GILD D+ GPS PR+ G
Sbjct: 1 MDKVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGK 60
Query: 316 RGEQ--VHNSGSGWSPVYV--TENLSLMSIGFLLGSADDAVIWRGPKKNGMIKQFLSEVD 483
E+ +H S +GW PVY T+ + LMS+GFLL S +D+V+WRGPKK MI+QF+S+V
Sbjct: 61 DAERNRIHQSSAGWVPVYTDETKEIGLMSLGFLLTSKNDSVVWRGPKKAAMIRQFISDVS 120
Query: 484 WGELDYLLIDTPPGTSDEHLSSVQYLSSAGLT-------GAVVVTTPQEVALLDVRKEIQ 642
WGELD+L+IDTPPGT DEHL+ V+ L S T GAV+VTTPQ +A LDV+KEI
Sbjct: 121 WGELDFLIIDTPPGTGDEHLTIVESLLSETSTVRDVPIDGAVIVTTPQGIATLDVQKEID 180
Query: 643 FCEKVSVPVLGVVENMSLFIC 705
FC+K S+ +LG+VENMS +IC
Sbjct: 181 FCKKASIKILGIVENMSGYIC 201
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 115 DPAIEIIKNRLSNVKHKILVLSGKGGVGKSTVTSLL 222
DP ++N L K + + GKGGVGK+T + L
Sbjct: 4 DPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSL 39
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 28.7 bits (61), Expect = 0.86
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 683 STTPSTGTDTFSQNCISLRTSSSATSCGVVTTTAPVS 573
STT S+ TD S + +S SSS S V+ T+P S
Sbjct: 156 STTDSSSTDVSSSDSVSTSASSSNAS-NTVSVTSPAS 191
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 268 RSQHLHMEFVQRVHVQARKLLYSSPLPPSRKVQVFC 161
+S + +FV+RV ++ R L YS+ + P ++VFC
Sbjct: 587 KSYRFNQQFVERVPLKYRSLTYSNKIEP---MKVFC 619
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 312 TEYTGLARTTYICIQDPNIYIWSSCSESMSKQGSYCTL 199
T+ + Y+CIQ Y W + SE M SYC+L
Sbjct: 740 TDMDSMDNCVYLCIQKFESYGWGASSE-MECYFSYCSL 776
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 151 NVKHKILVLSGKGGVGKSTVTSLLGHGLAARTPYVNVGILD 273
N+ H LV+SG G+GK+T L H L P G+L+
Sbjct: 53 NMPH--LVISGMPGIGKTTSILCLAHALLG--PAYKEGVLE 89
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 502 GSPAPPSPLRLRTALSYHFSWDPSI*PRRLHCPAETRSTLAIDSPLHIQETSPSQ 338
GSP PP+ ++ +LS H S P R PA + + + + P E P +
Sbjct: 455 GSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQPAASATPVPKEKPSEKSEKPPKK 509
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +1
Query: 118 PAIEIIKNRLSNVKH-KILVLSGKGGVGKST--VTSLLGHGLAA 240
PA E + + ++H +++V+SG+ G GKST V +L H L++
Sbjct: 578 PAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSS 621
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 85 LCASGEASRPDPAIEIIKNRLSNVKHKILVLSGKGGVGKSTVTSLLGHGL 234
+C+ G PD ++ + N L+N+ K ++ G +T+ +LL G+
Sbjct: 224 ICSIGAMISPDDDLKNLSNTLANIAEKWVLDEGLNSPDITTLQTLLVLGI 273
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 172 VLSGKGGVGKSTVTSLLGHGLAARTPYVNVG 264
+L G G GKST+ LL A+ +++VG
Sbjct: 34 LLVGANGAGKSTLLKLLSGKSLAKAGHISVG 64
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/66 (19%), Positives = 27/66 (40%)
Frame = -2
Query: 278 SASKIPTFTYGVRAASPCPSKEVTVLFPTPPFPESTSILCFTFDKRFFIISIAGSGREAS 99
++ +P ++ P + +++ P P + F ++RFF + +AG E
Sbjct: 47 ASQALPQISFSWTLIDQPPDGSLFLVWQAPTLPSPPDGMHFMSNERFFNMDVAGKVLEIH 106
Query: 98 PEAHRF 81
H F
Sbjct: 107 EAKHGF 112
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 175 LSGKGGVGKSTVTSLLGHGLAARTPYVNVGILDADICGPSQPRVLGV 315
L+G+ G+GKST+ L A ++ + ++ ++ G P + V
Sbjct: 213 LTGRNGIGKSTLLRALSRREIAIPTHITILHVEQEMTGDDTPALQSV 259
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 166 ILVLSGKGGVGKSTVTSLLGHG 231
ILV G G +G TV L+ HG
Sbjct: 8 ILVTGGAGYIGSHTVIELINHG 29
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 4.6
Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 1/150 (0%)
Frame = -2
Query: 656 TFSQNCISLRTSSSATSC-GVVTTTAPVSPALDRYCTDDKCSSDVPGGVXXXXXXXXXXX 480
T S + +S TSSS++S +TT SP+ + SS
Sbjct: 126 TVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Query: 479 XSLKNCFIIPFFLGPLHMTASSALPSRNPIDISDRFSVTYTGDQPEPELCTCSPRTPSTR 300
S + ++SS+ S + + I+ S +++ + S R S+
Sbjct: 186 SSSSSS-------SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSS 238
Query: 299 GWLGPHISASKIPTFTYGVRAASPCPSKEV 210
++ S++ I T T ++S S EV
Sbjct: 239 SFITTMSSSTFISTVTVTPSSSSSSTSSEV 268
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 556 TAPTTSARLTFLAVYQSVGSPAPPSPLRLRTA 461
T SA TF VY+++G P PL + A
Sbjct: 83 TKRAKSAEATFFRVYETLGEVPDPYPLLIEAA 114
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 683 STTPSTGTDTFSQNCISLRTSSSATSCGVVTTTAPV--SPALDRYCT 549
STTP T T + + L T++ TS V T+ PV +P CT
Sbjct: 405 STTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCT 451
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 221 SKEVT-VLFPTPPFPESTSILCFTFDKR 141
S+++T V TPPFPES + F+ +++
Sbjct: 116 SEDITAVSLSTPPFPESIDVARFSSEEK 143
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 683 STTPSTGTDTFSQNCISLRTSSSATSCGVVTTTAPVS 573
S+ +GTD+ + + + TSSSA + V + P S
Sbjct: 913 SSVVGSGTDSATSSSWTAETSSSAITSSVAASVTPTS 949
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -3
Query: 412 HCPAETRSTLAIDSPLHIQETSPSQSYVLAPRGHRVHGAGSDHIYLHPRS-QHLHMEFVQ 236
H RST ++ L+ S ++ + R H+ H A S + S L ++ +
Sbjct: 425 HSHTTPRSTSKHENNLNNITNSAKNEHIRSQRQHKTHAAPSKELTKESLSNDQLSVKEKR 484
Query: 235 RVHVQARKLLYSSPLPPSRKV 173
R H +A L+ + P + K+
Sbjct: 485 RHHKKAPTLIQNLNSPRTPKI 505
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 139 NRLSNVKHKILVLSGKGGVGKSTVTSLLGHGLAARTPYVNVG 264
N L N +++ ++++G+ G GK+ T + LAA VG
Sbjct: 156 NLLENKENQSILVTGESGAGKTENTKRIIQYLAAIASSTTVG 197
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 133 IKNRLSNVKHKILVLSGKGGVGKSTVTSLL 222
+ ++L +K K +V+ G GVGKST+ L
Sbjct: 9 VASKLVTLKLKPVVVFGPSGVGKSTLLKRL 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,977
Number of Sequences: 5004
Number of extensions: 71129
Number of successful extensions: 322
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
- SilkBase 1999-2023 -